CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
vacuole 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92868
KRG96825
KRG97765
KRH01780
KRH02229
KRH12134
KRH14977
KRH31120
KRH33916
KRH37135
KRH46912
KRH50894
KRH52586
KRH61926
KRH68539
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	KRG92868	AT1G09020.1	17028154
AT2G40000.1	KRG96825	AT1G09020.1	17028154
AT2G40000.1	KRH02229	AT1G09020.1	17028154
AT2G40000.1	KRH12134	AT1G09020.1	17028154
AT2G40000.1	KRH33916	AT1G09020.1	17028154
AT2G40000.1	KRH37135	AT1G09020.1	17028154
AT2G40000.1	KRH50894	AT1G09020.1	17028154
AT2G40000.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRG92868	AT1G09020.1	17028154
AT3G55840.1	KRG96825	AT1G09020.1	17028154
AT3G55840.1	KRH02229	AT1G09020.1	17028154
AT3G55840.1	KRH12134	AT1G09020.1	17028154
AT3G55840.1	KRH33916	AT1G09020.1	17028154
AT3G55840.1	KRH37135	AT1G09020.1	17028154
AT3G55840.1	KRH50894	AT1G09020.1	17028154
AT3G55840.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRH52586	AT1G71230.1	21798944
AT3G55840.1	KRH61926	AT1G71230.1	21798944
AT3G55840.1	KRG97765	AT3G55840.1	21798944
AT3G55840.1	KRH14977	AT3G55840.1	21798944
AT3G55840.1	KRH31120	AT3G55840.1	21798944
AT3G55840.1	KRH73164	AT3G55840.1	21798944
AT3G55840.1	KRH01780	AT5G16080.1	21798944
AT3G55840.1	KRH46912	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97765	Soybean	plastid	94.29	95.12
KRH73164	Soybean	cytosol	61.32	63.84
KRH14977	Soybean	plastid	64.18	62.66
CDY04614	Canola	cytosol	10.99	60.98
CDX68585	Canola	cytosol	10.99	60.98
CDY20507	Canola	cytosol	25.93	59.9
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	61.32	58.61
CDX72167	Canola	cytosol	10.55	58.54
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	54.29	58.25
CDY24933	Canola	cytosol	53.85	58.06
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	53.41	57.45
CDY70017	Canola	cytosol	52.75	57.14
Bra017040.1-P	Field mustard	cytosol	52.75	57.01
CDY07047	Canola	cytosol	52.09	56.29
AT2G40000.1	Thale cress	cytosol	53.41	55.86
CDX74813	Canola	cytosol	51.21	55.61
CDY61713	Canola	cytosol	51.43	55.45
Bra004994.1-P	Field mustard	cytosol	50.55	55.02
CDX72197	Canola	cytosol	50.99	54.59
CDY27261	Canola	cytosol	50.55	54.12
AT3G55840.1	Thale cress	cytosol, plastid	50.55	53.74
Bra007195.1-P	Field mustard	cytosol	50.11	53.65
GSMUA_Achr5P28920_001	Banana	cytosol	46.15	51.85
GSMUA_Achr10P...	Banana	nucleus	48.79	50.57
GSMUA_Achr11P...	Banana	plastid	49.89	47.99
HORVU3Hr1G111690.1	Barley	cytosol	13.85	46.67
KXG33721	Sorghum	plastid	46.59	45.2
HORVU3Hr1G084830.1	Barley	cytosol	46.15	44.97
Zm00001d042811_P001	Maize	cytosol	46.15	44.87
TraesCS3A01G368800.1	Wheat	cytosol	45.93	44.75
TraesCS3D01G361800.1	Wheat	cytosol	45.93	44.75
Os01t0855600-01	Rice	plasma membrane	46.37	44.51
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	45.49	44.33
Zm00001d012321_P001	Maize	plastid	45.49	43.67

Protein Annotations

KEGG:00380+1.13.11.11	Gene3D:1.20.58.480	MapMan:35.1	EMBL:ACUP02007123	EnsemblPlantsGene:GLYMA_11G228100	GO:GO:0003674
GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:I1LMP7	EnsemblPlants:KRH31120	ProteinID:KRH31120	ProteinID:KRH31120.1	PFAM:PF07014
PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI00001500D5	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:32323163..32325044

Molecular Weight (calculated)

51949.0 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.379

Length

455 amino acids

Sequence
(BLAST)

001: MVDLHWKSKM PSSDMPSKTL KLSLSDNKSL PSLQLPFRTT DISHAAPSVC ATYDYYLRLP QLRKLWNSSD FPNWNNEPIL KPILQALEIT FRFLSIVLSD
101: PRPYSNHREW TRRIESLITH QIEIIAILCE DEEQNSDTRG TAPTADLSRN NSSESRSYSE ASLLPRLATW YKSKDVAQRI LLSVECQMRR CSYTLGLGEP
201: NLAGKPSLLY DLVCKPNEIH ALKTTPYDER VENHENHALH ATHQIAESWI HASRKVLERI ADAVLSRTFE KAAEDCYAVE RIWKLLAEVE DLHLMMDPDD
301: FLRLKNQLSV KSSGGETASF CFRSKELVEL TKMCRDLRHK VPEILEVEVD PKGGPRIQEA AMKLYVSKSA FEKVHLLQAM QAIEAAMKRF FYAYKQVLAV
401: VMGSSEANGN RVGLSCDSAD SLTQIFLEPT YFPSLDAAKT FLGYLWDNND NNKWI

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.