Factsheet for Bra000158.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018586.1-P
Bra030752.1-P
Bra031654.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	Bra018586.1-P	AT1G09020.1	17028154
AT2G40000.1	Bra030752.1-P	AT1G09020.1	17028154
AT2G40000.1	Bra031654.1-P	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	96.93	97.16
Bra017040.1-P	Field mustard	cytosol	80.66	81.24
AT2G40000.1	Thale cress	cytosol	82.08	80.0
Bra004994.1-P	Field mustard	cytosol	76.65	77.75
Bra007195.1-P	Field mustard	cytosol	66.04	65.88
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	61.56	54.83
KRG97765	Soybean	plastid	57.78	54.32
KRH31120	Soybean	nucleus	58.25	54.29
KRH73164	Soybean	cytosol	51.18	49.66
GSMUA_Achr10P...	Banana	nucleus	50.94	49.2
GSMUA_Achr5P28920_001	Banana	cytosol	45.99	48.15
KRH14977	Soybean	plastid	52.59	47.85
HORVU3Hr1G111690.1	Barley	cytosol	15.09	47.41
GSMUA_Achr11P...	Banana	plastid	51.42	46.09
HORVU3Hr1G084830.1	Barley	cytosol	48.82	44.33
TraesCS3D01G361800.1	Wheat	cytosol	48.82	44.33
TraesCS3A01G368800.1	Wheat	cytosol	48.58	44.11
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	48.11	43.68
Os01t0855600-01	Rice	plasma membrane	48.58	43.46
KXG33721	Sorghum	plastid	47.64	43.07
Zm00001d042811_P001	Maize	cytosol	46.93	42.52
Zm00001d012321_P001	Maize	plastid	45.28	40.51

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	EnsemblPlantsGene:Bra000158	EnsemblPlants:Bra000158.1	EnsemblPlants:Bra000158.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:M4C7I0	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959
InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0002540253	SEG:seg	:	:	:

Description

AT2G40000 (E=2e-191) HSPRO2, ATHSPRO2 | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)

Coordinates

chrA03:-:9618443..9619717

Molecular Weight (calculated)

48399.1 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.346

Length

424 amino acids

Sequence
(BLAST)

001: MVDMDWKRKM LSSELSSKLH VTIPSPFKVP VSSPISCSAP AACSAYELYL RLPELKKLWS SREFPQWNDE PILKPALQAL EITFRLVSSV CSDARPYTNH
101: REWNRRLDSL VTNQIQLIAV ICEVEDEEED ERSAPLGDKR SSLSLLPHLA TWRKSEALGR KILCTIDNEM RRCKYTLGLG EQNVSNKPNL RYDAVCKPNE
201: VYSLKDNPYA DHIDNEENQT LYVLHQILES WIHASGNLLR RINTRIEEGR FGEAASDVYL VERIWKLMAE IEDLHVLMDP EDFLKLKQQL QIKSNGQNDA
301: FCFRSRGLVE MMKMTKDLRE KVPAVLGVEV DPTGGPRLQE AVMRLYATKG DCDKIHLLQG MQAVEAAAKR FFFAYKQLVA VVMGSAETSQ ESCDSLSQIF
401: MEPTYFPSLD AAKTFLGEFW SHLG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.