CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97765
KRH01228
KRH14977
KRH18445
KRH31120
KRH44934
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KRG97765	AT2G40000.1	17028154
AT1G09020.1	KRH14977	AT2G40000.1	17028154
AT1G09020.1	KRH31120	AT2G40000.1	17028154
AT1G09020.1	KRH73164	AT2G40000.1	17028154
AT1G09020.1	KRH01228	AT3G29160.1	17028154
AT1G09020.1	KRH18445	AT3G29160.1	17028154
AT1G09020.1	KRH44934	AT3G29160.1	17028154
AT1G09020.1	KRG97765	AT3G55840.1	17028154
AT1G09020.1	KRH14977	AT3G55840.1	17028154
AT1G09020.1	KRH31120	AT3G55840.1	17028154
AT1G09020.1	KRH73164	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	36.71	44.62
KRG92868	Soybean	cytosol, plastid	86.92	42.39
KRG96825	Soybean	cytosol	69.2	34.31
KRH68539	Soybean	cytosol	68.35	33.89
VIT_14s0128g00890.t01	Wine grape	cytosol	68.35	33.61
CDY31116	Canola	plastid	64.14	31.54
CDX95016	Canola	plastid	64.14	31.47
PGSC0003DMT400063659	Potato	cytosol, plastid	64.14	31.47
Solyc01g099280.2.1	Tomato	plastid	64.14	31.47
CDX93522	Canola	plastid	64.14	31.41
CDY06344	Canola	mitochondrion, plastid	63.71	31.33
CDY22651	Canola	mitochondrion, plastid	63.71	31.33
CDY32146	Canola	plastid	63.71	31.33
AT1G09020.1	Thale cress	cytosol, plastid	64.14	31.21
Bra031654.1-P	Field mustard	plastid	61.18	29.71
Bra018586.1-P	Field mustard	plastid	54.43	29.39
KRH12134	Soybean	nucleus	59.92	28.92
KRH50894	Soybean	nucleus	58.65	28.84
KRH37135	Soybean	cytosol	59.49	28.66
KRH02229	Soybean	nucleus	58.23	28.63
Bra030752.1-P	Field mustard	plastid	40.08	25.07

Protein Annotations

EMBL:ACUP02006566	EnsemblPlants:KRH33916	EnsemblPlantsGene:GLYMA_10G153700	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH33916	ProteinID:KRH33916.1
SUPFAM:SSF54631	UniParc:UPI000296383F	UniProt:I1LBB6	MapMan:18.4.5.1.4	MapMan:27.3.1.4	:

Description

hypothetical protein

Coordinates

chr10:+:38875288..38878216

Molecular Weight (calculated)

26353.8 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.058

Length

237 amino acids

Sequence
(BLAST)

001: MGIHGSNLTE EQLETHTIAV WRETQECRTD SNGRTYPQHM VHAGPLELAT VPIIHSSEDD SFPQLLHLVS LSEILKCIYR HFEHSSHCLP ILQLPIDSIP
101: VGTWVSKVGP NASLGDALSL LIQDEPEVSS IPIVDNNDSL LDINSRRDII ALVKDKVYAR ISLSGFSIHQ ALLLGRDARF SCRLHNGPRC HMCLRSDSLH
201: KERLANPGVR QLVVIEAGSR RVEGIISIGN VFRILLS

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.