CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	KRH01228	AT3G29160.1	10417704
AT3G48530.1	KRH18445	AT3G29160.1	10417704
AT3G48530.1	KRH44934	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57227	Soybean	cytosol	92.12	93.81
KRH63760	Soybean	cytosol	75.0	81.02
KRH54191	Soybean	nucleus	75.9	77.29
Solyc03g111310.2.1	Tomato	unclear	65.54	68.31
Bra018050.1-P	Field mustard	cytosol	64.64	68.01
CDY08080	Canola	cytosol	64.41	67.93
VIT_17s0000g01460.t01	Wine grape	peroxisome	65.77	67.91
PGSC0003DMT400039410	Potato	peroxisome	65.09	67.84
AT3G48530.1	Thale cress	cytosol	64.41	67.45
CDX68465	Canola	cytosol	64.19	67.22
CDY59154	Canola	cytosol	64.41	67.14
CDY70744	Canola	cytosol	55.63	65.52
Bra029902.1-P	Field mustard	mitochondrion	64.19	62.5
KXG26065	Sorghum	cytosol	56.53	59.34
TraesCS2B01G299000.1	Wheat	cytosol	56.76	59.29
TraesCS2D01G280600.1	Wheat	cytosol	56.53	59.06
Zm00001d004006_P001	Maize	cytosol, extracellular	56.08	58.87
TraesCS2A01G281700.1	Wheat	cytosol	56.31	58.82
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	56.08	58.59
HORVU2Hr1G069060.5	Barley	cytosol	56.53	54.21
GSMUA_AchrUn_...	Banana	extracellular, vacuole	50.68	51.61
KRH74794	Soybean	cytosol	32.66	32.73
GSMUA_Achr3P19540_001	Banana	nucleus	58.11	29.97
KRH69332	Soybean	endoplasmic reticulum, vacuole	32.43	29.81
KRH60826	Soybean	nucleus	17.79	22.83
KRH51517	Soybean	nucleus	22.3	22.71

Protein Annotations

EMBL:ACUP02010369	EnsemblPlants:KRH03956	EnsemblPlantsGene:GLYMA_17G129600	EntrezGene:100818156	Gene3D:3.10.580.10	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH03956
ProteinID:KRH03956.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0006EE0B99	UniProt:A0A0R0FNH1
MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:10379308..10386559

Molecular Weight (calculated)

49370.5 Da

IEP (calculated)

5.379

GRAVY (calculated)

-0.095

Length

444 amino acids

Sequence
(BLAST)

001: MGHRLTTFVA LHQREKKRER ERKVMAMATM EEIPQSPEAK LGMRVEDLWD VQEAQLSPTE KLNACFESIP VSAFPLDPSN TEIEIKSDAT LADAVKILAG
101: HNVFSAPVVD VEAPEDASWI DRYIGIVEFA GIVVWILHQS EPTSPRTPST PSSARAIAAA ANGAAFALEL EALGLGSAAT TAGNFFEDLT SSELYKNTKV
201: RDISGTFRWA PFLALERSNS FLTMLLLLSK YKMKSVPVLD LGSGAIDNII TQSAVIHMLA ECAGLQWFES WGTKKLSEVG LPLVTGNQII KVYEDEPVLQ
301: AFKVMRKKRV GGVPVIERET KKAVGNISLR DVQFLLTAPE IYHDYRGITV KDFLTEVRSY LEKNKNASPM LNEYVTCKKD CTIKELIQLL DQEKIHRVYV
401: VDDDGDLQGL ITLRDIISRL VHEPRGYFGD FFDGVLPLPA NSRV

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.