CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	KRH01228	AT3G29160.1	10417704
AT3G48530.1	KRH18445	AT3G29160.1	10417704
AT3G48530.1	KRH44934	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54191	Soybean	nucleus	95.13	89.68
KRH57227	Soybean	cytosol	80.54	75.92
KRH03956	Soybean	peroxisome	81.02	75.0
Solyc03g111310.2.1	Tomato	unclear	72.75	70.19
PGSC0003DMT400039410	Potato	peroxisome	72.75	70.19
Bra018050.1-P	Field mustard	cytosol	70.32	68.48
AT3G48530.1	Thale cress	cytosol	70.56	68.4
VIT_17s0000g01460.t01	Wine grape	peroxisome	71.53	68.37
CDY08080	Canola	cytosol	69.83	68.17
CDX68465	Canola	cytosol	70.32	68.16
CDY59154	Canola	cytosol	69.59	67.14
CDY70744	Canola	cytosol	61.31	66.84
Bra029902.1-P	Field mustard	mitochondrion	69.83	62.94
KXG26065	Sorghum	cytosol	62.53	60.76
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	62.53	60.47
Zm00001d004006_P001	Maize	cytosol, extracellular	62.04	60.28
TraesCS2B01G299000.1	Wheat	cytosol	61.31	59.29
TraesCS2A01G281700.1	Wheat	cytosol	60.83	58.82
TraesCS2D01G280600.1	Wheat	cytosol	60.58	58.59
HORVU2Hr1G069060.5	Barley	cytosol	59.61	52.92
GSMUA_AchrUn_...	Banana	extracellular, vacuole	54.01	50.92
KRH74794	Soybean	cytosol	34.06	31.6
GSMUA_Achr3P19540_001	Banana	nucleus	63.99	30.55
KRH69332	Soybean	endoplasmic reticulum, vacuole	33.33	28.36
KRH60826	Soybean	nucleus	18.25	21.68
KRH51517	Soybean	nucleus	22.14	20.87

Protein Annotations

EMBL:ACUP02002710	EnsemblPlants:KRH63760	EnsemblPlantsGene:GLYMA_04G195300	EntrezGene:100780629	Gene3D:3.10.580.10	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH63760
ProteinID:KRH63760.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0002339380	UniProt:I1JXJ6
MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:46720164..46723760

Molecular Weight (calculated)

45518.6 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.106

Length

411 amino acids

Sequence
(BLAST)

001: MVTMEESPRS PEAKLGLRVE DLWDIQEPQL SPDEKLNACF ESIPVSAFPP PPSNQEVEIK SDATLAEAVK LLAEHSILSA PVVDVDAPED ASWIDRYIGI
101: VEFAGIVVWI LHQSEPTSPR SPSSGAANTA AVTGVAYEAL GLESAATTSG NFFEDLTSSQ LYKNTKVRDI SGSFRWAPFL ALERSNSFLT MLLLLSKYKM
201: KSIPVVDLGA GRIDNIITQS SVIHMLAECA GLQWFESWGT KKLSEVGLPM VTPNHIIKVY EDEPVLQAFK LMRKKRIGGL PVMERGGSRA IGNISLQDVQ
301: FLLTAPEIYH DYRSITAKDF LTAVRSYLEK HEGAFPMSGD LITCNKNCTI KELIQLLDHE KNHRVYVADN EGNLEGLITL RDIISRLVHE PRGYFGDFFD
401: GVLPMPPNSR V

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.