CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69332	Soybean	endoplasmic reticulum, vacuole	93.45	85.71
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	69.3	69.14
VIT_01s0026g01740.t01	Wine grape	cytosol	69.07	68.92
Solyc01g010700.2.1	Tomato	nucleus	68.62	68.47
Bra013236.1-P	Field mustard	mitochondrion	32.96	66.67
GSMUA_Achr7P23930_001	Banana	cytosol	65.24	65.38
Bra007883.1-P	Field mustard	cytosol	65.01	64.57
CDY71798	Canola	cytosol	64.79	64.35
CDY56064	Canola	cytosol	63.66	63.23
CDY11653	Canola	cytosol	58.92	62.44
Zm00001d044315_P004	Maize	cytosol	62.75	61.64
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	62.98	61.59
AT1G69800.2	Thale cress	mitochondrion	66.14	61.55
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	62.53	61.15
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	62.53	61.15
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	62.08	60.98
Os01t0586600-01	Rice	cytosol	29.35	58.82
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	61.63	49.28
KRH63760	Soybean	cytosol	31.6	34.06
KRH54191	Soybean	nucleus	32.51	33.03
CDY38762	Canola	nucleus	57.79	32.82
KRH57227	Soybean	cytosol	32.28	32.8
KRH03956	Soybean	peroxisome	32.73	32.66
KRH60826	Soybean	nucleus	16.93	21.68
KRH51517	Soybean	nucleus	20.77	21.1

Protein Annotations

EntrezGene:100800376	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	EMBL:ACUP02000072	InterPro:CBS_dom
EnsemblPlantsGene:GLYMA_01G043400	InterPro:IPR000644	UniProt:K7K1R2	ProteinID:KRH74793.1	EnsemblPlants:KRH74794	ProteinID:KRH74794
ProteinID:KRH74794.1	ProteinID:KRH74795.1	ProteinID:KRH74796.1	ProteinID:KRH74797.1	ProteinID:KRH74798.1	PFAM:PF00571
PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0002337818
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4728360..4732303

Molecular Weight (calculated)

47814.0 Da

IEP (calculated)

5.542

GRAVY (calculated)

0.141

Length

443 amino acids

Sequence
(BLAST)

001: MAQEQEFRTS TPLPKCDAYF ETIQSRKKLP LSLQETLTDA FAKIPVSSFP AVPSGKVIEI LADTPVGEAV KILSESNILA APVKDPDASN SSDWRSRYLG
101: IIDYSAIILW VLEGAELAQA ALLAGTATAA GVGAGAAGAL GALALGLTGP AAIAGLTTAA AGAALAGGVA ADKVMAKDAP QAADNLGEDF YKIILEEEPF
201: KSTTVRSIIK SYRWAPFVPV ARNSAMLTVL LLLSKYRLRN VPVIEPGRPD IVNFITQSAV VQGLEGCKGR DWFDCIAEKC ISDLGLPFMS TDEVISIQSN
301: ELILEAFKQM KDNRIGGLPV IEGPKKRIVG NLSIRDIRHL LLRPELFTNF RKLTVMDFMK KIVSSSLQTG KVTQPITCKP DSTLQGVIHT LASQSIHRIY
401: VVDGHDEVVG VITLRDVISC FVTEPPYNFD DYYGFAVKEM LNQ

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.