CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71798	Canola	cytosol	84.93	79.6
CDY56064	Canola	cytosol	82.78	77.58
AT1G69800.2	Thale cress	mitochondrion	87.56	76.89
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	62.92	59.23
Solyc01g010700.2.1	Tomato	nucleus	62.68	59.01
KRH74794	Soybean	cytosol	62.44	58.92
VIT_01s0026g01740.t01	Wine grape	cytosol	61.96	58.33
GSMUA_Achr7P23930_001	Banana	cytosol	57.89	54.75
Zm00001d044315_P004	Maize	cytosol	57.42	53.22
KRH69332	Soybean	endoplasmic reticulum, vacuole	61.48	53.21
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	56.46	52.33
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	56.22	51.88
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	55.98	51.66
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	55.74	51.43
CDY38762	Canola	nucleus	91.39	48.97
Os01t0586600-01	Rice	cytosol	24.64	46.61
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	55.74	42.06
CDX68465	Canola	cytosol	34.21	33.73
CDY59154	Canola	cytosol	34.21	33.57
CDY70744	Canola	cytosol	30.14	33.42
CDY08080	Canola	cytosol	33.25	33.02

Protein Annotations

EnsemblPlants:CDY11653	EnsemblPlantsGene:GSBRNA2T00049795001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF47	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY11653	ProteinID:CDY11653.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EBAB56	UniProt:A0A078FHU5	MapMan:18.4.5.1.3	MapMan:27.3.1.3

Description

BnaC06g30860DBnaC06g30860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHU5]

Coordinates

chrLK032012:+:822064..823821

Molecular Weight (calculated)

45320.2 Da

IEP (calculated)

5.192

GRAVY (calculated)

0.020

Length

418 amino acids

Sequence
(BLAST)

001: MAESEKSHVD KEIRSSVSSC EAYFEKVQSR KNLPKSLQDT LNSAFAGIPV SSFPQVPGGR VIEIPAETSV SEAVKILSDS KILSAPVINK DHETSLDWKE
101: RYSGIIDYSS IILWVLESAE LAAIALSATS AAAAVGAAVA GGVAADRGIG KDAPTAADSL GKDFYQVILQ EEPFRSTTVG TILKSFRYAP FLPVSTESSM
201: LSVLLLLSKY RLRNVPVIKP GEPDIKNYIT QSAVVHGLEG CKGRDWFDHI SALPISDLGL PFMSPSEVIS IDSEELILEA FKRMRDNNIG GLPVVEGANK
301: KVIGNISMRD IRYLLLQPEV FSNFRQLTVK TFAAKIATAG DKYGSASLAI TCRPDSTLGS VINSLASRSV HRVYVADGDE DELYGVITLR DVISCFVSEP
401: PNYFENCLGF SVKEVLNR

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.