CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	CDX85250	AT3G29160.1	10417704
AT3G48530.1	CDX86386	AT3G29160.1	10417704
AT3G48530.1	CDY04058	AT3G29160.1	10417704
AT3G48530.1	CDY44405	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018050.1-P	Field mustard	cytosol	99.05	98.82
CDY59154	Canola	cytosol	95.72	94.6
CDX68465	Canola	cytosol	94.54	93.87
CDY70744	Canola	cytosol	83.85	93.63
AT3G48530.1	Thale cress	cytosol	90.97	90.33
KRH63760	Soybean	cytosol	68.17	69.83
VIT_17s0000g01460.t01	Wine grape	peroxisome	67.46	66.05
KRH54191	Soybean	nucleus	68.17	65.83
KRH57227	Soybean	cytosol	67.93	65.6
KRH03956	Soybean	peroxisome	67.93	64.41
PGSC0003DMT400039410	Potato	peroxisome	63.42	62.68
Solyc03g111310.2.1	Tomato	unclear	63.42	62.68
KXG26065	Sorghum	cytosol	59.14	58.87
Zm00001d004006_P001	Maize	cytosol, extracellular	58.67	58.39
TraesCS2B01G299000.1	Wheat	cytosol	58.67	58.12
TraesCS2D01G280600.1	Wheat	cytosol	58.43	57.88
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	58.19	57.65
TraesCS2A01G281700.1	Wheat	cytosol	57.96	57.41
HORVU2Hr1G069060.5	Barley	cytosol	57.96	52.7
GSMUA_AchrUn_...	Banana	extracellular, vacuole	52.02	50.23
CDY11653	Canola	cytosol	33.02	33.25
CDY56064	Canola	cytosol	33.73	31.84
CDY71798	Canola	cytosol	33.25	31.39
GSMUA_Achr3P19540_001	Banana	nucleus	60.33	29.5
CDY38762	Canola	nucleus	33.73	18.21

Protein Annotations

EnsemblPlants:CDY08080	EnsemblPlantsGene:GSBRNA2T00125348001	Gene3D:3.10.580.10	GO:A0A078F0V9	GO:GO:0003674	GO:GO:0003824
InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571	PFscan:PS51371
ProteinID:CDY08080	ProteinID:CDY08080.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EDC4C9
UniProt:A0A078F0V9	MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:

Description

BnaA06g16460DBnaA06g16460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0V9]

Coordinates

chrLK031983:+:79211..81204

Molecular Weight (calculated)

46990.5 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.091

Length

421 amino acids

Sequence
(BLAST)

001: MASVPEIKIV RSESLGHRSE VSSPEAKLGM RVEDLWDEQK PQLSPDEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVETLSKLKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLDPT SPRSPAVAGS NGTSHDFTAN GDDSAVTSGN FFEVLTSSEL YKNTKVRDIS GTFRWAPFLA LQKDNSFLTM
201: LLLLSKYKMK SIPVVDLGEA KIENIITQSG VIHMLAECVG LHWFEDWGVK TLSEVGLPIM SKDHIIKIYE DEPVLQAFKL MRRKRIGGIP VIERKSEKPV
301: GNISLRDVHF LLTAPEIYHD YRSITTKNFL VAVREHLEKR GDTSAPILSG VIACTKNHTL KELILMLDAE KIHRLYVVDD SGNLEGLVTL RDIIARLVYE
401: PPGYFGDFFD GVMPLPQNYR V

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.