Factsheet for GSMUA_Achr3P19540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	GSMUA_Achr10P...	AT3G29160.1	10417704
AT3G48530.1	GSMUA_AchrUn_...	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004006_P001	Maize	cytosol, extracellular	34.49	70.21
KXG26065	Sorghum	cytosol	34.26	69.74
TraesCS2B01G299000.1	Wheat	cytosol	34.38	69.65
TraesCS2A01G281700.1	Wheat	cytosol	34.03	68.94
TraesCS2D01G280600.1	Wheat	cytosol	33.91	68.71
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	33.91	68.71
KRH63760	Soybean	cytosol	30.55	63.99
Solyc03g111310.2.1	Tomato	unclear	31.48	63.62
VIT_17s0000g01460.t01	Wine grape	peroxisome	31.71	63.49
HORVU2Hr1G069060.5	Barley	cytosol	34.03	63.28
PGSC0003DMT400039410	Potato	peroxisome	31.24	63.15
CDY08080	Canola	cytosol	29.5	60.33
Bra018050.1-P	Field mustard	cytosol	29.5	60.19
CDX68465	Canola	cytosol	29.5	59.91
CDY59154	Canola	cytosol	29.62	59.86
AT3G48530.1	Thale cress	cytosol	29.38	59.67
KRH54191	Soybean	nucleus	30.2	59.63
KRH57227	Soybean	cytosol	30.08	59.4
CDY70744	Canola	cytosol	25.67	58.62
KRH03956	Soybean	peroxisome	29.97	58.11
Bra029902.1-P	Field mustard	mitochondrion	30.31	57.24
GSMUA_AchrUn_...	Banana	extracellular, vacuole	27.64	54.59
GSMUA_Achr7P23930_001	Banana	cytosol	16.38	31.9
GSMUA_Achr2P09000_001	Banana	cytoskeleton, cytosol, peroxisome	9.76	20.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	Gene3D:3.30.60.180	InterPro:CBS_dom
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G19540_001	EnsemblPlants:GSMUA_Achr3P19540_001
EnsemblPlants:GSMUA_Achr3T19540_001	InterPro:IPR000644	InterPro:IPR002893	InterPro:IPR011990	UniProt:M0SG20	PFAM:PF00571
PFAM:PF01753	PFscan:PS50865	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	SMART:SM00116
SUPFAM:SSF144232	SUPFAM:SSF54631	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294DA4C
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

SNF1-related protein kinase regulatory subunit gamma 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G19540_001]

Coordinates

chr3:-:20917371..20928718

Molecular Weight (calculated)

95495.7 Da

IEP (calculated)

8.285

GRAVY (calculated)

-0.188

Length

861 amino acids

Sequence
(BLAST)

001: MRTRRGLCYP RPQWAVEEEE EEEESRSRKR RRWLPVGGDD SVPGMAAENP AGDRPDFFDG LPDDLVVSIL CKLSASAASP SDLVSVLITC KRLHGLGTNP
101: LVLSKASAKS LAIRAKNWSE STDRFFKRCA DAGNLEARYI LGMIRFYCLQ DRASGASLMA QAAMGSHAAA LYSLAVIQFN GSGGSKGDKD LRAGVALCAR
201: AAFLGHIDAL RELGHCLQDG YGVRRNVAEG RRFLVQANAR ELAAAHPANR FMVQWFASNG TGGGSGDEGL RLCSHRGCGR PETRRQEFRR CSVCGAVNYC
301: SRACQALHWK LAHKAECAPT ERWLDAGGAG FARRTTIRSG RKQLPPIENL SRAGRAQPVC PSLGSIIRYV RRVIGAWVRK LLLSWSMSDK SVAIAGQGAA
401: GWFSVSARDR RARAMDGGME SPVGRSPRTP EAEIGHRLED LWDVQQPQLS PSQKLNSCFE DLPVSSFPAA PPSQVIDIPS DASLADAVET LSKHKILSAP
501: VRNVNAPEDA SWIDKYIGIV EFPGIAVWLL HQSAPSIVGK FVNHPIFKLT MFFEPIKDYT YKSNSFTSVI ELVMQVFCLL FFSMFEIANS NPEDAASMGG
601: CFFETLTSSE FYKNTKVEDI AGSFRWAPFL ALQNSDSFLT MLLLLSKYRM KSLPVVDLGE GKIENVITQS AVVHMLAECV GLHWFENWGS KKLYELGLPI
701: MKPNRLLKVS EEEPVLKAFK LMRKKGIGGL PVVNESGERA IGNISIRDVQ YLLTAPEIYK DYRSITVKNF LTAVRSYLEE HHEASPMLRD LVTCKRDDTL
801: EDIILRLDHE KIHRIYVVDE EENLQGVITL RDIISKLVHE PHGYFGDFFY GVVPLPESSR V

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.