Factsheet for Zm00001d004006_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005108_P003
Zm00001d010811_P002
Zm00001d038745_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	Zm00001d005108_P003	AT3G29160.1	10417704
AT3G48530.1	Zm00001d010811_P002	AT3G29160.1	10417704
AT3G48530.1	Zm00001d038745_P002	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26065	Sorghum	cytosol	97.87	97.87
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	89.36	88.94
TraesCS2B01G299000.1	Wheat	cytosol	88.65	88.24
TraesCS2A01G281700.1	Wheat	cytosol	88.65	88.24
TraesCS2D01G280600.1	Wheat	cytosol	87.94	87.53
HORVU2Hr1G069060.5	Barley	cytosol	87.23	79.7
KRH63760	Soybean	cytosol	60.28	62.04
VIT_17s0000g01460.t01	Wine grape	peroxisome	62.41	61.4
Solyc03g111310.2.1	Tomato	unclear	61.23	60.8
PGSC0003DMT400039410	Potato	peroxisome	60.76	60.33
Bra018050.1-P	Field mustard	cytosol	58.87	59.0
CDY08080	Canola	cytosol	58.39	58.67
KRH54191	Soybean	nucleus	60.05	58.26
AT3G48530.1	Thale cress	cytosol	57.68	57.55
CDX68465	Canola	cytosol	57.45	57.31
CDY59154	Canola	cytosol	57.68	57.28
KRH57227	Soybean	cytosol	58.63	56.88
KRH03956	Soybean	peroxisome	58.87	56.08
CDY70744	Canola	cytosol	49.17	55.17
Zm00001d012019_P001	Maize	peroxisome	56.74	54.92
Bra029902.1-P	Field mustard	mitochondrion	57.45	53.29
GSMUA_Achr3P19540_001	Banana	nucleus	70.21	34.49
Zm00001d044315_P004	Maize	cytosol	30.73	28.82
Zm00001d044124_P001	Maize	cytosol	21.99	22.85

Protein Annotations

EntrezGene:100280507	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	EMBL:BT063795	UniProt:C0P676
InterPro:CBS_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0030312
InterPro:IPR000644	ProteinID:ONM18133.1	PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI000194905B	EnsemblPlantsGene:Zm00001d004006	EnsemblPlants:Zm00001d004006_P001	EnsemblPlants:Zm00001d004006_T001
SEG:seg	:	:	:	:	:

Description

SNF1-related protein kinase regulatory subunit gamma-1

Coordinates

chr2:+:75025145..75030389

Molecular Weight (calculated)

46567.6 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.146

Length

423 amino acids

Sequence
(BLAST)

001: MESPRSPEAE IGHRVEDLWE VAEPQLSPSE KLNSCFEDIP VASFPRTHPS QVIEIPSDAS LAETVEILSK NKILSAPIRN VEAPEDASWM DKYIGIVEFA
101: GIAMWLLSQS DAAVNGTVGS GPGSPVSSLV SRLGSFTFRR TSSGRLETAT DSESDEAASV GGSFFETLTS SEFYKNTKVG DISGSFRWAP FLALQTSDTF
201: LTMLLLLSKY RMKSLPVVEV GGDKIENIIT QSSVVHMLAE CVGLSWFENW GTKKLSELGL PVMKPSKLVK VSEDQPVLKA FQLMREKGVG GLPVMDTSGA
301: NAIGNISIRD VQYLLTAPKI YKEHRSITTK DFLSAVRHHL QEQREASPLL HDVITCKKDD TIKDIILKLD SEKIHRIYVV DDKGNTEGVI TLRDIISKLV
401: HEPRHYFGDF FDGVVPLPAN STV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.