CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	KRH01228	AT3G29160.1	10417704
AT3G48530.1	KRH18445	AT3G29160.1	10417704
AT3G48530.1	KRH44934	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03956	Soybean	peroxisome	93.81	92.12
KRH63760	Soybean	cytosol	75.92	80.54
KRH54191	Soybean	nucleus	76.15	76.15
Solyc03g111310.2.1	Tomato	unclear	66.97	68.54
PGSC0003DMT400039410	Potato	peroxisome	66.51	68.08
Bra018050.1-P	Field mustard	cytosol	65.83	68.01
CDY08080	Canola	cytosol	65.6	67.93
VIT_17s0000g01460.t01	Wine grape	peroxisome	66.97	67.91
AT3G48530.1	Thale cress	cytosol	65.6	67.45
CDX68465	Canola	cytosol	65.37	67.22
CDY59154	Canola	cytosol	65.6	67.14
CDY70744	Canola	cytosol	56.88	65.78
Bra029902.1-P	Field mustard	mitochondrion	64.91	62.06
KXG26065	Sorghum	cytosol	57.34	59.1
Zm00001d004006_P001	Maize	cytosol, extracellular	56.88	58.63
TraesCS2B01G299000.1	Wheat	cytosol	57.11	58.59
TraesCS2D01G280600.1	Wheat	cytosol	56.88	58.35
TraesCS2A01G281700.1	Wheat	cytosol	56.65	58.12
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	56.42	57.88
HORVU2Hr1G069060.5	Barley	cytosol	55.96	52.7
GSMUA_AchrUn_...	Banana	extracellular, vacuole	50.69	50.69
KRH74794	Soybean	cytosol	32.8	32.28
GSMUA_Achr3P19540_001	Banana	nucleus	59.4	30.08
KRH69332	Soybean	endoplasmic reticulum, vacuole	33.03	29.81
KRH51517	Soybean	nucleus	23.39	23.39
KRH60826	Soybean	nucleus	18.12	22.83

Protein Annotations

EMBL:ACUP02002822	EnsemblPlants:KRH57227	EnsemblPlantsGene:GLYMA_05G047700	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH57227	ProteinID:KRH57227.1
SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI00029590EA	UniProt:I1K0A8	MapMan:18.4.5.1.3
MapMan:27.3.1.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:4251349..4255305

Molecular Weight (calculated)

48556.4 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.119

Length

436 amino acids

Sequence
(BLAST)

001: MSCYREKERE RERESVMAMA TMGESPRSPE AKLGMRVEDL WDVQEPQLSP TEKLNACFES IPVSAFPLDP SNTEIEIKSD ATLADAVKIL ARHNVFSAPV
101: VDVEAPEDAS WMDRYIGIVE FAGIVVWILH QSEPTSPRCP STPSSARAIA AAANGAAFAL ELEALGLGSA ATTAGNFFED LTSSELYKNT KVRDISGTFR
201: WAPFLALERS NSFLTMLLLL SKYKMKSVPV LDLGSGTIDN IITQSAVIHM LAECAGLQWF ESWGTKKLSE VGLPLVTGNQ IIKVYEDEPV LQAFKVMRKK
301: RVGGVPVIER ETKKAVGNIS LRDVQFLLTA PEIYHDYRGI TVKNFLTEVR SYLEKNKNAS PMLSEYVTCK KDCTIKELIQ LLDQEKIHRV YVVEDDGDLQ
401: GLITLRDIIS RLVHEPRGYF GDFFDGVLPL PANTRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.