CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	CDX85250	AT3G29160.1	10417704
AT3G48530.1	CDX86386	AT3G29160.1	10417704
AT3G48530.1	CDY04058	AT3G29160.1	10417704
AT3G48530.1	CDY44405	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70744	Canola	cytosol	88.21	99.2
CDY08080	Canola	cytosol	93.87	94.54
AT3G48530.1	Thale cress	cytosol	93.63	93.63
CDY59154	Canola	cytosol	93.16	92.72
KRH63760	Soybean	cytosol	68.16	70.32
VIT_17s0000g01460.t01	Wine grape	peroxisome	67.69	66.74
KRH54191	Soybean	nucleus	67.69	65.83
KRH57227	Soybean	cytosol	67.22	65.37
KRH03956	Soybean	peroxisome	67.22	64.19
Solyc03g111310.2.1	Tomato	unclear	63.68	63.38
PGSC0003DMT400039410	Potato	peroxisome	63.68	63.38
KXG26065	Sorghum	cytosol	57.78	57.92
Zm00001d004006_P001	Maize	cytosol, extracellular	57.31	57.45
TraesCS2B01G299000.1	Wheat	cytosol	57.31	57.18
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	56.84	56.71
TraesCS2D01G280600.1	Wheat	cytosol	56.84	56.71
TraesCS2A01G281700.1	Wheat	cytosol	56.6	56.47
HORVU2Hr1G069060.5	Barley	cytosol	56.6	51.84
GSMUA_AchrUn_...	Banana	extracellular, vacuole	51.18	49.77
CDY11653	Canola	cytosol	33.73	34.21
CDY56064	Canola	cytosol	33.73	32.06
CDY71798	Canola	cytosol	33.25	31.61
GSMUA_Achr3P19540_001	Banana	nucleus	59.91	29.5
CDY38762	Canola	nucleus	33.49	18.21

Protein Annotations

EnsemblPlants:CDX68465	EnsemblPlantsGene:GSBRNA2T00125923001	Gene3D:3.10.580.10	GO:A0A078BUN8	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571	PFscan:PS51371	ProteinID:CDX68465	ProteinID:CDX68465.1
SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EC1B77	MapMan:18.4.5.1.3	MapMan:27.3.1.3

Description

BnaC01g25430D

Coordinates

chrLK031788:-:1931078..1933337

Molecular Weight (calculated)

47279.0 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.062

Length

424 amino acids

Sequence
(BLAST)

001: MASVPEIKIV RSESLGHRSE VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSHSQDI ELRSDTSLAE AVQTLSKLKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLDPT SPRSPAVAGS NGVSHDFTAV ILDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKDNSF
201: LTMLLLLSKY KMKSIPVVDL GEAKIENIIT QSGVIHMLAE CAGLHWFEDW GVKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVVERKSE
301: KPVGNISLRD VHFLLTAPEI YHDYRSITTK NFLVAVREHL EKHGDTSAPI LSGVIACTKN HTLKELILML DAEKIHRMYV VDDSGNLEGL ITLRDIIARL
401: VHEPPGYFGD FFDGVMPLPQ NYRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.