Factsheet for Solyc03g111310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	Solyc02g067030.2.1	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039410	Potato	peroxisome	98.83	98.83
KRH63760	Soybean	cytosol	70.19	72.75
VIT_17s0000g01460.t01	Wine grape	peroxisome	71.13	70.47
KRH54191	Soybean	nucleus	69.01	67.43
KRH57227	Soybean	cytosol	68.54	66.97
KRH03956	Soybean	peroxisome	68.31	65.54
AT3G48530.1	Thale cress	cytosol	63.38	63.68
CDX68465	Canola	cytosol	63.38	63.68
Bra018050.1-P	Field mustard	cytosol	62.91	63.51
CDY08080	Canola	cytosol	62.68	63.42
TraesCS2B01G299000.1	Wheat	cytosol	63.15	63.29
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	62.91	63.06
TraesCS2A01G281700.1	Wheat	cytosol	62.68	62.82
CDY59154	Canola	cytosol	62.68	62.68
TraesCS2D01G280600.1	Wheat	cytosol	62.44	62.59
KXG26065	Sorghum	cytosol	61.5	61.94
CDY70744	Canola	cytosol	54.46	61.54
Zm00001d004006_P001	Maize	cytosol, extracellular	60.8	61.23
Bra029902.1-P	Field mustard	mitochondrion	63.85	59.65
HORVU2Hr1G069060.5	Barley	cytosol	62.44	57.45
GSMUA_AchrUn_...	Banana	extracellular, vacuole	55.16	53.9
Solyc01g010700.2.1	Tomato	nucleus	34.51	33.11
GSMUA_Achr3P19540_001	Banana	nucleus	63.62	31.48

Protein Annotations

MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	InterPro:CBS_dom	GO:GO:0003674	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0030312	GO:GO:0045859
InterPro:IPR000644	UniProt:K4BJZ4	PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36
SMART:SM00116	SUPFAM:SSF54631	EnsemblPlantsGene:Solyc03g111310.2	EnsemblPlants:Solyc03g111310.2.1	UniParc:UPI0002768EF6	SEG:seg

Description

SNF1-related protein kinase regulatory subunit gamma-1 [Source:Projected from Arabidopsis thaliana (AT3G48530) UniProtKB/Swiss-Prot;Acc:Q8LBB2]

Coordinates

chr3:+:61925775..61930389

Molecular Weight (calculated)

47416.1 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.116

Length

426 amino acids

Sequence
(BLAST)

001: MVMEEGCQTP RSPEAKVGMQ VEDLWDIQEP QLSPTEKLNA CFENIPVSDF PPAPSNQVIE INSDATLAEA VKLLSQHKIL SAPVVDVDAP EDATWIDRYI
101: GIVEFAGIVV WILHQSEKME GTSAFDSVMN GADDTLSPAL AAAVNGVASP RFRSLHPESP TATSGNFFET LTSSDLYKNT KVRDISGSFR WAPFLALQKS
201: NSFLTMLLLL SKYKMKSVPV VDLGEYKIDN IITQPAVIHM LEECAGLHWF ESWGSKKLYE LGLPLMKPSS IIQVEEDEPV LQAFKLMRQK GVGGVPVVES
301: GGRKAIGNIS IRDIQFLLIA PEIYKDYRSI TAKNFLTSVR RYQGEHEKNS PFLSHMVTCR RGDSLKDVIM KLDSKKIHRI YVVDDMGNLE GVITLRDIIS
401: KLVHEPRGYF GDFFDGVLPL PANSRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.