Factsheet for VIT_17s0000g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0108g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	VIT_14s0108g01230.t01	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63760	Soybean	cytosol	68.37	71.53
Solyc03g111310.2.1	Tomato	unclear	70.47	71.13
PGSC0003DMT400039410	Potato	peroxisome	69.77	70.42
CDX68465	Canola	cytosol	66.74	67.69
Bra018050.1-P	Field mustard	cytosol	66.28	67.54
CDY08080	Canola	cytosol	66.05	67.46
KRH54191	Soybean	nucleus	68.37	67.43
KRH57227	Soybean	cytosol	67.91	66.97
AT3G48530.1	Thale cress	cytosol	65.81	66.75
CDY70744	Canola	cytosol	58.14	66.31
CDY59154	Canola	cytosol	65.58	66.2
KRH03956	Soybean	peroxisome	67.91	65.77
Bra029902.1-P	Field mustard	mitochondrion	66.74	62.94
KXG26065	Sorghum	cytosol	61.63	62.65
Zm00001d004006_P001	Maize	cytosol, extracellular	61.4	62.41
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	61.4	62.12
TraesCS2B01G299000.1	Wheat	cytosol	60.23	60.94
TraesCS2A01G281700.1	Wheat	cytosol	59.77	60.47
TraesCS2D01G280600.1	Wheat	cytosol	59.77	60.47
HORVU2Hr1G069060.5	Barley	cytosol	60.0	55.72
GSMUA_AchrUn_...	Banana	extracellular, vacuole	53.26	52.52
GSMUA_Achr3P19540_001	Banana	nucleus	63.49	31.71
VIT_01s0026g01740.t01	Wine grape	cytosol	32.33	31.31
VIT_03s0038g04580.t01	Wine grape	cytosol, golgi, peroxisome, plastid	20.93	20.0

Protein Annotations

EntrezGene:100259395	wikigene:100259395	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	EMBL:AM426713
ProteinID:CAN62486	ProteinID:CAN62486.1	InterPro:CBS_dom	ProteinID:CCB43323	ProteinID:CCB43323.1	UniProt:F6GST8
EMBL:FN594950	GO:GO:0003674	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887
GO:GO:0030234	GO:GO:0030312	GO:GO:0045859	InterPro:IPR000644	EntrezGene:LOC100259395	wikigene:LOC100259395
PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	SMART:SM00116	SUPFAM:SSF54631
TIGR:TC59536	TIGR:TC63267	UniParc:UPI0001984F2D	ArrayExpress:VIT_17s0000g01460	EnsemblPlantsGene:VIT_17s0000g01460	EnsemblPlants:VIT_17s0000g01460.t01
unigene:Vvi.12727	RefSeq:XP_002283726	RefSeq:XP_002283726.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:1034680..1037481

Molecular Weight (calculated)

47405.4 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.091

Length

430 amino acids

Sequence
(BLAST)

001: MEDSPRSGGM SSPEAKLGMR VEDLWDVQEP QLTPTEKLNA CFESVPVSAF PPASSQVIEI KSDCSLAEAV QILTKHRILS APVVDVEAPE DASWIDRYIG
101: IVEFAGIVVW ILYQSELASP RKNGGAPAAG FGTGGKEEAI TAVAAAANGM NSPRRLKNLG FEPAEPTPGS FFEALTSSEF YKNTKVRDIS GSFRWAPFLA
201: LQKSNSFLTM LLLLSNYKMK SVPVVDLGEG KIDNIVTQSA VIHMLAECVG LSWFERWGAK KMSELGLPTM KPDQVIKVNE DEPVLQAFKL MRKKGIGGIP
301: VVESGGRKAV GNISIRDVQF LLTTPEIYRE FRSITAKNFL VAVRKYLEQH NEASPMLSGM ITCRRNQTVK EMILMLDSVK IQRVYVVDED GNLEGVITLR
401: DIISKLVHEP RGYFGDFFDG VLPMPQNSRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.