Factsheet for TraesCS2D01G280600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	TraesCS1A01G350500.1	AT3G29160.1	10417704
AT3G48530.1	TraesCS1B01G364800.1	AT3G29160.1	10417704
AT3G48530.1	TraesCS1D01G353300.1	AT3G29160.1	10417704
AT3G48530.1	TraesCS3A01G282800.1	AT3G29160.1	10417704
AT3G48530.1	TraesCS3B01G316500.1	AT3G29160.1	10417704
AT3G48530.1	TraesCS3D01G282800.1	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G299000.1	Wheat	cytosol	97.88	97.88
TraesCS2A01G281700.1	Wheat	cytosol	97.65	97.65
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	90.12	90.12
KXG26065	Sorghum	cytosol	88.47	88.89
HORVU2Hr1G069060.5	Barley	cytosol	96.47	88.55
Zm00001d004006_P001	Maize	cytosol, extracellular	87.53	87.94
Solyc03g111310.2.1	Tomato	unclear	62.59	62.44
PGSC0003DMT400039410	Potato	peroxisome	62.12	61.97
KRH63760	Soybean	cytosol	58.59	60.58
VIT_17s0000g01460.t01	Wine grape	peroxisome	60.47	59.77
Bra018050.1-P	Field mustard	cytosol	58.35	58.77
CDY08080	Canola	cytosol	57.88	58.43
AT3G48530.1	Thale cress	cytosol	57.41	57.55
KRH57227	Soybean	cytosol	58.35	56.88
CDX68465	Canola	cytosol	56.71	56.84
CDY59154	Canola	cytosol	56.94	56.81
KRH54191	Soybean	nucleus	58.12	56.65
KRH03956	Soybean	peroxisome	59.06	56.53
CDY70744	Canola	cytosol	48.71	54.91
TraesCS3D01G425000.1	Wheat	peroxisome	55.53	54.88
Bra029902.1-P	Field mustard	mitochondrion	56.94	53.07
GSMUA_Achr3P19540_001	Banana	nucleus	68.71	33.91
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	30.59	28.7
TraesCS3D01G224700.1	Wheat	nucleus	22.59	23.7

Protein Annotations

MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	InterPro:CBS_dom	GO:GO:0003674	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0030312	InterPro:IPR000644
PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	SMART:SM00116	SUPFAM:SSF54631
EnsemblPlantsGene:TraesCS2D01G280600	EnsemblPlants:TraesCS2D01G280600.1	TIGR:cd04642	:	:	:

Description

No Description!

Coordinates

chr2D:-:352762934..352767831

Molecular Weight (calculated)

46954.0 Da

IEP (calculated)

5.455

GRAVY (calculated)

-0.170

Length

425 amino acids

Sequence
(BLAST)

001: METDSPRSPE AEIGHRVEDL WEVAQPQLSP SEKLNSCFED IPVAAFPRNH PSQVIEIPSD ASLSDTVETL SKNKILSAPI RNVDAPEDAT WIDKYIGIVE
101: FAGIAMWLLH QSDASGNGTA GSAVGSPVAN LASRLGSFTF RRTSSGRVET TTDSESDEAA SVGGSFFETL TSSEFYKNTK VGDISGSFRW APFLALQTSD
201: TFLTMLLLLS KYRMKSLPVV DMGGNQIENI ITQSCVVHML AECVGLPWFE SWGTKKLSEL GLPLMKPYKL VKVNEDQPVL KAFQLMREKG VGGVPVIDTN
301: GTKAIGNISI RDVQYLLSAP KIYKQYRTIS AKDFLTAVRH HLQEQHEASP LLHDVITCKR DDVIKEIILK LDSTKIHRIY VVDDKGDTEG VITLRDIISK
401: LVHEPRHYFG DFFDGVVPLP TNSTV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.