Factsheet for PGSC0003DMT400039410

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	PGSC0003DMT400063153	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111310.2.1	Tomato	unclear	98.83	98.83
KRH63760	Soybean	cytosol	70.19	72.75
VIT_17s0000g01460.t01	Wine grape	peroxisome	70.42	69.77
KRH54191	Soybean	nucleus	69.01	67.43
KRH57227	Soybean	cytosol	68.08	66.51
KRH03956	Soybean	peroxisome	67.84	65.09
AT3G48530.1	Thale cress	cytosol	63.38	63.68
CDX68465	Canola	cytosol	63.38	63.68
Bra018050.1-P	Field mustard	cytosol	62.91	63.51
CDY08080	Canola	cytosol	62.68	63.42
TraesCS2B01G299000.1	Wheat	cytosol	62.68	62.82
CDY59154	Canola	cytosol	62.68	62.68
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	62.44	62.59
TraesCS2A01G281700.1	Wheat	cytosol	62.21	62.35
TraesCS2D01G280600.1	Wheat	cytosol	61.97	62.12
CDY70744	Canola	cytosol	54.46	61.54
KXG26065	Sorghum	cytosol	61.03	61.47
Zm00001d004006_P001	Maize	cytosol, extracellular	60.33	60.76
Bra029902.1-P	Field mustard	mitochondrion	63.85	59.65
HORVU2Hr1G069060.5	Barley	cytosol	61.97	57.02
GSMUA_AchrUn_...	Banana	extracellular, vacuole	54.93	53.67
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	34.27	32.88
GSMUA_Achr3P19540_001	Banana	nucleus	63.15	31.24

Protein Annotations

EntrezGene:102584848	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	InterPro:CBS_dom	GO:GO:0003674
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0030312
GO:GO:0045859	InterPro:IPR000644	UniProt:M1B891	PFAM:PF00571	EnsemblPlantsGene:PGSC0003DMG400015241	PGSC:PGSC0003DMG400015241
EnsemblPlants:PGSC0003DMT400039410	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI0002951CF3	RefSeq:XP_006351472.1	SEG:seg	:	:	:

Description

AMP-activated protein kinase, gamma regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400015241]

Coordinates

chr3:+:50925275..50929940

Molecular Weight (calculated)

47415.1 Da

IEP (calculated)

5.320

GRAVY (calculated)

-0.109

Length

426 amino acids

Sequence
(BLAST)

001: MVMEEGCQTP RSPEAKVGMQ VEDLWDIQEP QLSPTEKLNA CFENIPVSDF PPAPSNQVIE INSDATLAEA VKLLSQHKIL SAPVVDVDAP EDATWIDRYI
101: GIVEFAGIVV WILHQSEKME GTSAFDSVMN AADDTLSPAL AAAVNGVASP RFRSLHPESP TATSGNFFET LTSSDLYKNT KVRDISGSFR WAPFLALQKS
201: NSFLTMLLLL SKYKMKSIPV VDLGEYKIDN IITQPAVIHM LEECAGLHWF ESWGSKKLYE LGLPLMKPSS IIQVDEDEPV LQAFKLMRQN GVGGVPVVES
301: GGRKAIGNIS IRDIQFLLIA PEIYKDYRSI TAKNFLTSVR RYQGEHEKNS PFLSHMVTCR RGNSLKDVIM KLDSKKIHRI YVVDDMGNLE GVITLRDIIS
401: KLVHEPRGYF GDFFDGVLPL PANSRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.