Factsheet for PGSC0003DMT400002254

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 2
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010700.2.1	Tomato	nucleus	96.62	96.62
VIT_01s0026g01740.t01	Wine grape	cytosol	70.5	70.5
KRH74794	Soybean	cytosol	69.14	69.3
Bra013236.1-P	Field mustard	mitochondrion	32.43	65.75
GSMUA_Achr7P23930_001	Banana	cytosol	65.09	65.38
Bra007883.1-P	Field mustard	cytosol	65.54	65.25
CDY71798	Canola	cytosol	65.09	64.8
CDY56064	Canola	cytosol	64.64	64.35
KRH69332	Soybean	endoplasmic reticulum, vacuole	68.69	63.15
CDY11653	Canola	cytosol	59.23	62.92
AT1G69800.2	Thale cress	mitochondrion	67.12	62.6
Zm00001d044315_P004	Maize	cytosol	63.51	62.53
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	62.61	61.64
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	62.61	61.37
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	62.61	61.37
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	62.39	61.15
Os01t0586600-01	Rice	cytosol	29.05	58.37
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	61.71	49.46
PGSC0003DMT400039410	Potato	peroxisome	32.88	34.27
CDY38762	Canola	nucleus	57.88	32.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400002254	EnsemblPlantsGene:PGSC0003DMG400000861	EntrezGene:102605494	Gene3D:3.10.580.10	GO:GO:0003674	GO:GO:0003824
InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	PFAM:PF00571	PFscan:PS51371
PGSC:PGSC0003DMG400000861	RefSeq:XP_006363925.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI000295F1A1
UniProt:M0ZJU5	MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:

Description

AMP-activated protein kinase, gamma regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400000861]

Coordinates

chr1:-:13544687..13548706

Molecular Weight (calculated)

47410.2 Da

IEP (calculated)

5.893

GRAVY (calculated)

0.183

Length

444 amino acids

Sequence
(BLAST)

001: MAQAKITENT SKLASYDAYF EMVQRRKKLP RNLQETLTDA FANIPVSSFP QVPGGKVIEI DAETSIGDAV KILSESNILS VPVKNRAAQN SLDWRERYLG
101: VLDYSAIVLW VLEGAETAAA AISASSAAAA GVGAGTVGAL GALALGATGP AAVAGLTVAA VGAAVAGGVA ADRGAGKDAP TAADTLGEDF YKVILQEEPF
201: KSTKVSSIIK SYRWAPFVPV AMDSSMLSVL LLLSKYRLRN VPVIERGSPY LKNFITQSAV VRGLVGCKGR DWFDCISAHP ISELGLPYMS ADEVISVRDD
301: ELILEAFKKM RDNNIGGLPV VEGPKKKIVG NVSIRDIRFL LLKPELFSNF RQLTVAGFMN TVASATHDAT KAATPITCKL GSTLCTVIDT LASKLVHRIY
401: VTAEDGDEVV GVITLRDVIS CFIYEPPNFF DNYFGFSAQE MLGN

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.