CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
nucleus 1
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044315_P004	Maize	cytosol	94.01	94.01
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	86.7	86.31
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	86.47	86.09
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	86.47	86.09
Os01t0586600-01	Rice	cytosol	37.25	76.02
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	84.7	68.95
GSMUA_Achr7P23930_001	Banana	cytosol	65.41	66.74
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	61.64	62.61
KRH74794	Soybean	cytosol	60.98	62.08
VIT_01s0026g01740.t01	Wine grape	cytosol	60.53	61.49
Solyc01g010700.2.1	Tomato	nucleus	60.31	61.26
Bra013236.1-P	Field mustard	mitochondrion	29.49	60.73
Bra007883.1-P	Field mustard	cytosol	58.09	58.74
CDY71798	Canola	cytosol	57.87	58.52
CDY56064	Canola	cytosol	56.98	57.62
CDY11653	Canola	cytosol	52.33	56.46
KRH69332	Soybean	endoplasmic reticulum, vacuole	59.87	55.9
AT1G69800.2	Thale cress	mitochondrion	58.98	55.88
KXG26065	Sorghum	cytosol	29.27	31.21
CDY38762	Canola	nucleus	51.66	29.87
EES04118	Sorghum	cytosol	26.61	27.33
KXG32947	Sorghum	cytosol	20.62	22.52

Protein Annotations

EnsemblPlants:EES03176	EnsemblPlantsGene:SORBI_3003G200600	EntrezGene:8078229	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	PFAM:PF00571	PFscan:PS51371	ProteinID:EES03176	ProteinID:EES03176.1
RefSeq:XP_002458056.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	unigene:Sbi.9050	UniParc:UPI0001A84E34
UniProt:C5XPF7	MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:52839729..52842642

Molecular Weight (calculated)

48271.3 Da

IEP (calculated)

4.740

GRAVY (calculated)

0.166

Length

451 amino acids

Sequence
(BLAST)

001: MEQPEENPEF PSCDAYFQAI QSKKKLPLSL QESLTAAFAQ IPVSSFPEVP TGRVIEIPGD TSVLDAVRTL SEQNIRAAPV LNPEPGAPTD WQGRYLGVID
101: YSAIIRWVLE NAELAGVALS AASATAAGVG MGAVGAVGVA ALGATGPAAV AGLTAAAIGA AVAGGLTAEK GVAKDGLTAA DHLGEDFYEV LLQQEPFRST
201: TVRSIVESYH WSPFVPITLD TSMLTVLLLL SKYRLRNVPV IEPEKPIIKN FITQTGVLKG LQQCKGRDWF DYISALPLSD LGLPFMSIDE VITVNSDDLI
301: LEAFKCMKDN KIGGVPVVEG PKRKLVGSVS IRDIRFLLLR PNLFSNFRQL TVIEFMKTLG STLPDSGNNC LVKPPPTCTP DASLGSVIDS IASRITHRIY
401: VVDVDLEVVG VVTLRDVISC FIHEPPGYCD SYLTSAMEKL DGKGVGSVEK R

Best Arabidopsis Sequence Match ( AT1G69800.2 )
(BLAST)

001: MHFIRTRVTA RKAKPKICLK FFKLSRYQDM AGSEAVEDKE IKSAVSSCEA YFEKVQSRKN LPKSLQETLN SAFAGIPVSS FPQVPGGRVI EIQAETPVSE
101: AVKILSDSKI LSAPVINTDH ESSLDWRERY LGIIDYSSII LWVLESAELA AIALSATSAT AAGVGAGAVG ALGVAALGMT GPVAAAGLAA AAVGAAVAGG
201: VAAERGIGKD APTAADKLGK DFYEVILQEE PFKSTTVRTI LKSFRWAPFL PVSTESSMLS VMLLLSKYRL RNVPVIKTGE PDIKNYVTQS AVVHGLEGCK
301: GRDWFDHISA LPISDLGLPF MSPNEVISIE SEELILEAFK RMRDNNIGGL PVVEGLNKKI VGNISMRDIR YLLLQPEVFS NFRQLTVKSF ATKIATAGEE
401: YGLAIPAITC RPDSTLGSVI NSLASRSVHR VYVAAGDENE LYGVITLRDV ISCFVSEPPN YFENCLGFSV KEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.