Factsheet for VIT_01s0026g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	70.5	70.5
Solyc01g010700.2.1	Tomato	nucleus	70.27	70.27
KRH74794	Soybean	cytosol	68.92	69.07
Bra013236.1-P	Field mustard	mitochondrion	34.01	68.95
GSMUA_Achr7P23930_001	Banana	cytosol	68.02	68.33
Bra007883.1-P	Field mustard	cytosol	67.79	67.49
CDY71798	Canola	cytosol	67.79	67.49
CDY56064	Canola	cytosol	66.44	66.14
Os01t0586600-01	Rice	cytosol	32.21	64.71
KRH69332	Soybean	endoplasmic reticulum, vacuole	67.79	62.32
CDY11653	Canola	cytosol	58.33	61.96
Zm00001d044315_P004	Maize	cytosol	62.61	61.64
AT1G69800.2	Thale cress	mitochondrion	65.99	61.55
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	62.16	60.93
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	62.16	60.93
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	61.49	60.53
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	61.71	60.49
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	60.59	48.56
CDY38762	Canola	nucleus	59.68	33.97
VIT_17s0000g01460.t01	Wine grape	peroxisome	31.31	32.33
VIT_03s0038g04580.t01	Wine grape	cytosol, golgi, peroxisome, plastid	19.82	19.56

Protein Annotations

EntrezGene:100243233	wikigene:100243233	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	EMBL:AM462408
ProteinID:CAN74704	ProteinID:CAN74704.1	ProteinID:CBI32008	ProteinID:CBI32008.3	InterPro:CBS_dom	UniProt:D7TND5
EMBL:FN596002	GO:GO:0003674	GO:GO:0003824	InterPro:IPR000644	EntrezGene:LOC100243233	wikigene:LOC100243233
PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI0001982B03	ArrayExpress:VIT_01s0026g01740	EnsemblPlantsGene:VIT_01s0026g01740	EnsemblPlants:VIT_01s0026g01740.t01	RefSeq:XP_002277342	RefSeq:XP_002277342.1
RefSeq:XP_010652368.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:10983756..10987227

Molecular Weight (calculated)

47781.9 Da

IEP (calculated)

6.407

GRAVY (calculated)

0.202

Length

444 amino acids

Sequence
(BLAST)

001: MAQAQEAKES PQLLSCDAYF ENIQSRKKLP RSLQESLTAA FARIPVSSFP EVLGGKVVEI RGDAIIAEAV KTLSLCNILS APVRNPDAGT SLDWRERYLG
101: IIDYSAIILW VLESAQLAAV AFSASTATAA GVSAGAVGAL GALALGATGP AAVAGITVAA VGAAVAGGMA ADRGMGKDAP TAADHLGEEF YKVLFQEEPF
201: KSTTVQSILK SYRSAPFLPV ATDSSMLSVL LLLSKYRMRN VPVIEPGQPF VKNYITQSAI VQGLERCKGR DWFDCIAAHP ISDLGLPFMS HNEVVTIQSN
301: ELILEAFKKM KDNKIGGLPV VEGPRKKIVG NVSIRDIRFL LLNPDLFSNF RQLTVMDFMT TIASTTEEAG NVIQPMTCHL NSALGSVIHT LAAKSVHRIY
401: VVAGQEDEVV GVITLRDVIS CFIFEPPNHF DNYFGFTVKE MLNK

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.