CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74794	Soybean	cytosol	85.71	93.45
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	63.15	68.69
Solyc01g010700.2.1	Tomato	nucleus	62.53	68.02
VIT_01s0026g01740.t01	Wine grape	cytosol	62.32	67.79
Bra013236.1-P	Field mustard	mitochondrion	30.23	66.67
Bra007883.1-P	Field mustard	cytosol	59.01	63.9
CDY71798	Canola	cytosol	58.8	63.68
GSMUA_Achr7P23930_001	Banana	cytosol	57.97	63.35
CDY56064	Canola	cytosol	57.76	62.56
AT1G69800.2	Thale cress	mitochondrion	60.87	61.76
CDY11653	Canola	cytosol	53.21	61.48
Zm00001d044315_P004	Maize	cytosol	56.52	60.53
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	56.73	60.49
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	56.73	60.49
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	56.73	60.49
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	55.9	59.87
Os01t0586600-01	Rice	cytosol	26.5	57.92
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	55.9	48.74
KRH63760	Soybean	cytosol	28.36	33.33
KRH57227	Soybean	cytosol	29.81	33.03
CDY38762	Canola	nucleus	53.0	32.82
KRH54191	Soybean	nucleus	29.4	32.57
KRH03956	Soybean	peroxisome	29.81	32.43
KRH60826	Soybean	nucleus	15.94	22.25
KRH51517	Soybean	nucleus	19.46	21.56

Protein Annotations

EntrezGene:100779500	MapMan:18.4.5.1.3	MapMan:27.3.1.3	Gene3D:3.10.580.10	EMBL:ACUP02000702	InterPro:CBS_dom
EnsemblPlantsGene:GLYMA_02G020200	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:I1JBP2	InterPro:IPR000644
EnsemblPlants:KRH69332	ProteinID:KRH69332	ProteinID:KRH69332.1	PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780
PANTHER:PTHR13780:SF47	SMART:SM00116	SUPFAM:SSF54631	TMHMM:TMhelix	UniParc:UPI000295EFAB	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:1833300..1836626

Molecular Weight (calculated)

52788.1 Da

IEP (calculated)

6.999

GRAVY (calculated)

0.153

Length

483 amino acids

Sequence
(BLAST)

001: MISNQNLLFN LHLFIFPYIV SWFQIKFCYS CTRSISSIPD MAQEQEYRTS TTLPKCDTYF ETIQSRKKLP LSLQETLTDA FAKIPVSSFP AVPSGKVIEI
101: LADTPIGEAV KILSESNILS APVKDPEAAN SSDWRRRYLG IIDYSAIILW VLEGAELAHK ALLVGTATAA GVGAGAAGAM GALALGVTGP AAIAGLTAAA
201: AGAALAGGIA ADRVVAKDAP QAADNLGEDF YKIILEEEPF KSTTVRSIIK SYRWAPFVPV ARNSAMLTVL LLLSKYRLRN VPVIETGKPD IVNFITQSAV
301: VQGLEGCKGR DWFDCIAEKR IADLGLPFMS TDEVISIQSN ELILEAFKQM RDNKIGGLPI VEGPKKRIVG NLSIRDIRHL LLRPELFTNF RKLTVMNFMN
401: KIVSSSLQTG KVTQSITCKP DSTLQGVIHT LASQSIHRIY VVDGQDEVVG VITLRDVISC FVTEPPYNFD DYYGFAVKEM LNQ

Best Arabidopsis Sequence Match ( AT1G69800.1 )
(BLAST)

001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.