CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11653	Canola	cytosol	48.97	91.39
CDY71798	Canola	cytosol	45.9	80.27
CDY56064	Canola	cytosol	44.87	78.48
AT1G69800.2	Thale cress	mitochondrion	46.15	75.63
VIT_01s0026g01740.t01	Wine grape	cytosol	33.97	59.68
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	32.95	57.88
KRH74794	Soybean	cytosol	32.82	57.79
Solyc01g010700.2.1	Tomato	nucleus	32.56	57.21
GSMUA_Achr7P23930_001	Banana	cytosol	32.31	57.01
KRH69332	Soybean	endoplasmic reticulum, vacuole	32.82	53.0
Zm00001d044315_P004	Maize	cytosol	30.26	52.33
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	29.87	51.66
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	30.0	51.66
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	30.0	51.66
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	29.87	51.43
Os01t0586600-01	Rice	cytosol	13.33	47.06
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	30.13	42.42
CDY08080	Canola	cytosol	18.21	33.73
CDY59154	Canola	cytosol	18.33	33.57
CDX68465	Canola	cytosol	18.21	33.49
CDY70744	Canola	cytosol	15.9	32.89

Protein Annotations

MapMan:15.5.22	MapMan:18.4.5.1.3	Gene3D:2.20.25.80	MapMan:27.3.1.3	Gene3D:3.10.580.10	GO:A0A078HLK5
UniProt:A0A078HLK5	InterPro:CBS_dom	EnsemblPlants:CDY38762	ProteinID:CDY38762	ProteinID:CDY38762.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00066556001
InterPro:IPR000644	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF00571	PFAM:PF03106	PFscan:PS50811
PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	SMART:SM00116	SMART:SM00774	SUPFAM:SSF118290
SUPFAM:SSF54631	UniParc:UPI0004EF2CD8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

BnaA07g28340DBnaA07g28340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLK5]

Coordinates

chrLK032432:-:64101..68647

Molecular Weight (calculated)

85813.3 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.349

Length

780 amino acids

Sequence
(BLAST)

001: MIKEKISSCV HPSDGIVESD KEVELDATKA KLEKVREENE KLKLLLSTVL TDYKSLQMHV SNVIRPQHEA SMELDTNSHD NFGVDISLRL GRSDLNVSKN
101: VDEIDKISLD KISDEISEGS DKKRSALGLG FRIQSCEDTD TDLTMKLDYL SKDVKHTKAD NKCISSRKDN KTARNEDHQE AFEVHEQPGL KKTRVCVKAP
201: CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSPSLSYYFP
301: FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP THSSLSFSSS SSDRPSPTNS HTLSFSDMAE SEKSHVDKEI RSSVSSCEAY FEKVQSRKNL PKSLQDTLNS
401: AFAGIPVSSF PQVPGGRVIE IPAETSVSEA VRILSDSKIL SAPVINKDHE SSLDWKERYS GIIDYSSIIL WVLESAELAA IALSATSRWR FRPAAAVGAA
501: VAGGVAADRG IGKDAVTAAD SLGKDFYQVI LQEEPFKSTT VGTILKSFRY APFLPVSTES SMLSVLLLLS KYRLRNVPVI KPGEPDIKNY ITQSAVVHGL
601: EGCKGRDWFD HISALPISDL GLPFMSPSEV ISIGSEELIL EAFKRMRDNN IGGLPVVEGA NKKVVGNISM RDIRYLLLQP EVFSNFRQLT VKTFAAKIAT
701: AGEKYGSASL AITCRPDSTL GSVINSLASR SVHRVYVVDG DEDELYGVIT LRDVISCFVS EPPNYFENCL GFSVKEVLNR

Best Arabidopsis Sequence Match ( AT1G69800.2 )
(BLAST)

001: MHFIRTRVTA RKAKPKICLK FFKLSRYQDM AGSEAVEDKE IKSAVSSCEA YFEKVQSRKN LPKSLQETLN SAFAGIPVSS FPQVPGGRVI EIQAETPVSE
101: AVKILSDSKI LSAPVINTDH ESSLDWRERY LGIIDYSSII LWVLESAELA AIALSATSAT AAGVGAGAVG ALGVAALGMT GPVAAAGLAA AAVGAAVAGG
201: VAAERGIGKD APTAADKLGK DFYEVILQEE PFKSTTVRTI LKSFRWAPFL PVSTESSMLS VMLLLSKYRL RNVPVIKTGE PDIKNYVTQS AVVHGLEGCK
301: GRDWFDHISA LPISDLGLPF MSPNEVISIE SEELILEAFK RMRDNNIGGL PVVEGLNKKI VGNISMRDIR YLLLQPEVFS NFRQLTVKSF ATKIATAGEE
401: YGLAIPAITC RPDSTLGSVI NSLASRSVHR VYVAAGDENE LYGVITLRDV ISCFVSEPPN YFENCLGFSV KEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.