Factsheet for Solyc01g010700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002254	Potato	cytosol, endoplasmic reticulum, peroxisome	96.62	96.62
VIT_01s0026g01740.t01	Wine grape	cytosol	70.27	70.27
KRH74794	Soybean	cytosol	68.47	68.62
Bra013236.1-P	Field mustard	mitochondrion	32.21	65.3
GSMUA_Achr7P23930_001	Banana	cytosol	64.64	64.93
Bra007883.1-P	Field mustard	cytosol	64.86	64.57
CDY71798	Canola	cytosol	64.41	64.13
CDY56064	Canola	cytosol	64.19	63.9
CDY11653	Canola	cytosol	59.01	62.68
KRH69332	Soybean	endoplasmic reticulum, vacuole	68.02	62.53
AT1G69800.2	Thale cress	mitochondrion	65.99	61.55
Zm00001d044315_P004	Maize	cytosol	62.16	61.2
EES03176	Sorghum	cytosol, peroxisome, plasma membrane	61.26	60.31
TraesCS2B01G203900.2	Wheat	cytosol, peroxisome, plasma membrane	61.26	60.04
TraesCS2D01G185000.1	Wheat	cytosol, peroxisome, plasma membrane	61.26	60.04
TraesCS2A01G177000.1	Wheat	cytosol, peroxisome, plasma membrane	61.04	59.82
Os01t0586600-01	Rice	cytosol	29.28	58.82
HORVU2Hr1G032570.2	Barley	cytosol, plasma membrane	60.36	48.38
Solyc03g111310.2.1	Tomato	unclear	33.11	34.51
CDY38762	Canola	nucleus	57.21	32.56

Protein Annotations

EnsemblPlants:Solyc01g010700.2.1	EnsemblPlantsGene:Solyc01g010700.2	Gene3D:3.10.580.10	GO:GO:0003674	GO:GO:0003824	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47	PFAM:PF00571	PFscan:PS51371	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0002761CFA	UniProt:K4ATR3	MapMan:18.4.5.1.3	MapMan:27.3.1.3

Description

No Description!

Coordinates

chr1:-:5726264..5728807

Molecular Weight (calculated)

47383.1 Da

IEP (calculated)

7.337

GRAVY (calculated)

0.160

Length

444 amino acids

Sequence
(BLAST)

001: MAQAKITENT SKLASYDAYF EKAQKRKKLP RNLQETLTDA FANIPVSSFP QVPGGKVIEI DAETSIGDAV KILSESNILS VPVKNPVAKN SLDWRERYLG
101: VLDYSAIVLW VLEGAETAAA AISASSAAAA GVGAGTAGAL GALALGATGP AAVAGLTVAA VGAAVAGGVA ADRGAGKDAP TAANNLGEDF YKVILQEEPF
201: KSTKVSSIIK SYRWAPFVPV AMDSSMLSVL LLLSKYRLRN VPVIERGSPY LKNFITQSAV VRGLVGCKGR DWFDCISAHP ISELGLPYMS ADEVISVRDD
301: ELILEAFKKM RDNNIGGLPV VEGSKKKIVG NVSIRDIRFL LLKPELFSNF RQLTVAGFMN TVASATHDAT KAATPITCKL GSTLCTVIDT LASKLVHRIY
401: VTAEDGDEVV GVITLRDVIS CFIYEPSNFF DNYFGFSAQE MLRN

Best Arabidopsis Sequence Match ( AT1G69800.2 )
(BLAST)

001: MHFIRTRVTA RKAKPKICLK FFKLSRYQDM AGSEAVEDKE IKSAVSSCEA YFEKVQSRKN LPKSLQETLN SAFAGIPVSS FPQVPGGRVI EIQAETPVSE
101: AVKILSDSKI LSAPVINTDH ESSLDWRERY LGIIDYSSII LWVLESAELA AIALSATSAT AAGVGAGAVG ALGVAALGMT GPVAAAGLAA AAVGAAVAGG
201: VAAERGIGKD APTAADKLGK DFYEVILQEE PFKSTTVRTI LKSFRWAPFL PVSTESSMLS VMLLLSKYRL RNVPVIKTGE PDIKNYVTQS AVVHGLEGCK
301: GRDWFDHISA LPISDLGLPF MSPNEVISIE SEELILEAFK RMRDNNIGGL PVVEGLNKKI VGNISMRDIR YLLLQPEVFS NFRQLTVKSF ATKIATAGEE
401: YGLAIPAITC RPDSTLGSVI NSLASRSVHR VYVAAGDENE LYGVITLRDV ISCFVSEPPN YFENCLGFSV KEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.