Factsheet for GSMUA_AchrUn_randomP05910_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

cytosol 2
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48530.1	GSMUA_Achr10P...	AT3G29160.1	10417704
AT3G48530.1	GSMUA_AchrUn_...	AT3G29160.1	10417704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111310.2.1	Tomato	unclear	53.9	55.16
PGSC0003DMT400039410	Potato	peroxisome	53.67	54.93
KRH63760	Soybean	cytosol	50.92	54.01
VIT_17s0000g01460.t01	Wine grape	peroxisome	52.52	53.26
CDY08080	Canola	cytosol	50.23	52.02
Bra018050.1-P	Field mustard	cytosol	50.23	51.9
CDY59154	Canola	cytosol	50.23	51.41
KRH54191	Soybean	nucleus	51.38	51.38
CDX68465	Canola	cytosol	49.77	51.18
AT3G48530.1	Thale cress	cytosol	49.54	50.94
KRH57227	Soybean	cytosol	50.69	50.69
KRH03956	Soybean	peroxisome	51.61	50.68
CDY70744	Canola	cytosol	41.28	47.75
Bra029902.1-P	Field mustard	mitochondrion	49.54	47.37
GSMUA_Achr7P23930_001	Banana	cytosol	30.28	29.86
GSMUA_Achr3P19540_001	Banana	nucleus	54.59	27.64
GSMUA_Achr2P09000_001	Banana	cytoskeleton, cytosol, peroxisome	19.27	20.95

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP05910_001	EnsemblPlants:GSMUA_AchrUn_randomT05910_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG05910_001	Gene3D:3.10.580.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF36	PFAM:PF00571
PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	TMHMM:TMhelix	UniParc:UPI000295FD0B
UniProt:M0U6Q2	MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:	:

Description

SNF1-related protein kinase regulatory subunit gamma 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05910_001]

Coordinates

chrchrUn_random:+:25408927..25416831

Molecular Weight (calculated)

48430.2 Da

IEP (calculated)

5.505

GRAVY (calculated)

0.144

Length

436 amino acids

Sequence
(BLAST)

001: MYLELLLMSL GDILFIIFIT NILFVFLKDA STALPTICSI KWETKEETMV EIPSDSTLAN AIEILSKHKI MSAPVRDVEA PENASWIDRY IGIVEFAGIA
101: VWILHQSEVV ASGMKASPAA TRDANKLAAK LGTVVTLERT MSGLDSSAIP VEANGEIKDK VHSTGSGATE ATIAGNIFEV FTSSDLYKIT KVSDISGSFR
201: WAPFLALQKS DSFLTMLLLL SKYKMKSLPV VDLGEEKIDN IITQSAIIHM LAECVGLHWF ENWGTKKLFE LGLPIMMPRK LIKVREDEPV LNAFQLMRNK
301: GVGGLPVVDG SGRKAIGTIS IRDIHYLLTQ PALCDKYRSI TTKDFIIKIK AYVEEQQVVS STMNNVITCK RDETVKDIIL SLDMEKIQRI YVVDQDENLE
401: GVITLRDIIS RLVHEPHGYF GDFFDGVVPL PQGSRV

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.