CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	KRH01228	AT3G29160.1	12148529
AT3G52180.1	KRH18445	AT3G29160.1	12148529
AT3G52180.1	KRH44934	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92090	Soybean	plastid	94.88	94.88
Solyc11g007830.1.1	Tomato	plastid	69.0	69.19
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	68.46	68.28
PGSC0003DMT400070294	Potato	plastid	67.92	68.11
VIT_00s0250g00020.t01	Wine grape	mitochondrion	69.27	67.99
PGSC0003DMT400039423	Potato	mitochondrion, plastid	67.39	67.2
CDY72539	Canola	cytosol	44.2	66.13
Bra006908.1-P	Field mustard	plastid	60.11	63.17
AT3G52180.1	Thale cress	plastid	63.88	62.53
CDY23194	Canola	cytosol, plastid	63.07	62.07
CDX78070	Canola	mitochondrion, plastid	63.07	62.07
KXG40392	Sorghum	plastid	62.26	61.93
CDX73654	Canola	mitochondrion, plastid	62.53	61.54
TraesCS4D01G353800.1	Wheat	plastid	60.65	60.98
TraesCS4B01G360800.2	Wheat	plastid	60.65	60.98
TraesCS5A01G529100.1	Wheat	plastid	59.84	60.16
Zm00001d027309_P007	Maize	plastid	62.8	59.59
HORVU4Hr1G086650.11	Barley	plastid	60.38	57.29
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	63.07	56.12
Bra033449.1-P	Field mustard	cytosol	60.38	40.58
KRH53770	Soybean	plastid	25.34	31.97
KRH64175	Soybean	cytosol	25.88	31.17
KRH07193	Soybean	plastid	22.64	14.36
KRG94231	Soybean	plastid	22.1	13.92

Protein Annotations

EntrezGene:100786287	Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	EMBL:ACUP02006613	InterPro:AMPK1_CBM
InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom	EnsemblPlantsGene:GLYMA_10G200100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005982	GO:GO:0006464	GO:GO:0006470	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203
GO:GO:0019538	UniProt:I1LCP2	InterPro:IPR000387	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021
InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRH34699	ProteinID:KRH34699	ProteinID:KRH34699.1	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like
SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI000233D518
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:43088147..43096138

Molecular Weight (calculated)

41902.7 Da

IEP (calculated)

5.499

GRAVY (calculated)

-0.387

Length

371 amino acids

Sequence
(BLAST)

001: MNCLRNLSRF SVLPFETPVT RHRKNLPLSL GFVNNSRQYP TMALKAASGS IPSADTSSAD KEEEKSETYS HNMTEAMGAV LTYRHELGMN YNFIRPDLIV
101: GSCLQTPEDV DKLRRIGVKT IFCLQQDSDL EYFGVDINAI REYAKTCNDI QHLRAEIRDF DAFDLRRRLP AVVSKLYKAI NSNGGVTYIH CTAGLGRAPA
201: VALAYMFWVL GYKLNEAHTL LQSKRSCFPK LDAIKSATAD ILTGLSKKSV TLSWEDKNCS TVEISGLDIG WGQRIPLNFD DKEGLWFLKR ELPEGLYEYK
301: YIVDGEWTCN SDELITSPNK DGHVNNFIQV LDDTSSVRAS LRKRLTADDP DLTTDEQLRI KEFLEACPDE D

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.