Factsheet for Bra006908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025379.1-P
Bra033088.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	Bra025379.1-P	AT3G29160.1	12148529
AT3G52180.1	Bra033088.1-P	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72539	Canola	cytosol	68.27	97.18
CDX78070	Canola	mitochondrion, plastid	86.4	80.9
AT3G52180.1	Thale cress	plastid	86.4	80.47
CDX73654	Canola	mitochondrion, plastid	83.57	78.25
PGSC0003DMT400070294	Potato	plastid	64.02	61.08
KRH34699	Soybean	nucleus	63.17	60.11
KRG92090	Soybean	plastid	62.89	59.84
PGSC0003DMT400039423	Potato	mitochondrion, plastid	62.89	59.68
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	62.89	59.68
VIT_00s0250g00020.t01	Wine grape	mitochondrion	63.17	58.99
Solyc11g007830.1.1	Tomato	plastid	61.19	58.38
KXG40392	Sorghum	plastid	56.94	53.89
TraesCS4D01G353800.1	Wheat	plastid	54.67	52.3
TraesCS4B01G360800.2	Wheat	plastid	54.67	52.3
TraesCS5A01G529100.1	Wheat	plastid	53.82	51.49
Zm00001d027309_P007	Maize	plastid	56.37	50.9
Bra033449.1-P	Field mustard	cytosol	77.62	49.64
HORVU4Hr1G086650.11	Barley	plastid	54.96	49.62
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	56.09	47.48
Bra029881.1-P	Field mustard	plastid	25.21	31.12

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	EnsemblPlantsGene:Bra006908	EnsemblPlants:Bra006908.1
EnsemblPlants:Bra006908.1-P	InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005982	GO:GO:0006464	GO:GO:0006470	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203
GO:GO:0019538	InterPro:IPR000387	InterPro:IPR013783	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:M4CRR6	PFAM:PF00782	PFAM:PF16561	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58
InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0002542DBF	SEG:seg

Description

AT3G52180 (E=8e-142) ATPTPKIS1, DSP4, SEX4 | SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase

Coordinates

chrA09:-:26096082..26099030

Molecular Weight (calculated)

40050.3 Da

IEP (calculated)

7.727

GRAVY (calculated)

-0.351

Length

353 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS SVSPLLGFGG NQRDPSSSSL KMLLPIRAND PKLRLVLQAV SDSKSSTDMS VLTYRHELGM NYNFLRPDLI CGSCLQTPED VDKLRKIGVK
101: TIFCLQQDPD LEYFGVDIRS IQAYAKTFTD IEHIRCEIRD FDAFDLRMRL PAVVSTLYKA VKRNGGVTYV HCTAGMGRAP AVALTYMFWV QGYKLMEAHK
201: ILMSKRTCFP KLDAIRNATI DILTGLKKKT VTLTLKDKGF STVEISGLDI GWGQRIPLTL DKRTGFWSLK RELPEGQFEY KYIIDGEWTH NEQEPFTGPN
301: KDGHTNNYAK VVYDPTSVDG ATRERLTRED PELLEDERLK LVQFLETCSE AEV

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.