CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	CDX85250	AT3G29160.1	12148529
AT3G52180.1	CDX86386	AT3G29160.1	12148529
AT3G52180.1	CDY04058	AT3G29160.1	12148529
AT3G52180.1	CDY44405	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72539	Canola	cytosol	64.46	97.98
CDX73654	Canola	mitochondrion, plastid	96.55	96.55
Bra006908.1-P	Field mustard	plastid	80.9	86.4
AT3G52180.1	Thale cress	plastid	81.17	80.74
CDY23194	Canola	cytosol, plastid	77.19	77.19
KRH34699	Soybean	nucleus	62.07	63.07
KRG92090	Soybean	plastid	61.27	62.26
Solyc11g007830.1.1	Tomato	plastid	59.42	60.54
VIT_00s0250g00020.t01	Wine grape	mitochondrion	59.68	59.52
PGSC0003DMT400070294	Potato	plastid	58.36	59.46
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	57.56	58.33
PGSC0003DMT400039423	Potato	mitochondrion, plastid	57.03	57.8
KXG40392	Sorghum	plastid	57.03	57.64
TraesCS4D01G353800.1	Wheat	plastid	55.97	57.18
TraesCS4B01G360800.2	Wheat	plastid	55.7	56.91
TraesCS5A01G529100.1	Wheat	plastid	54.91	56.1
Zm00001d027309_P007	Maize	plastid	56.76	54.73
HORVU4Hr1G086650.11	Barley	plastid	54.64	52.69
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	54.11	48.92
CDY66368	Canola	plastid	24.93	32.87
CDY00979	Canola	plastid	24.93	32.87
CDY08562	Canola	plastid	24.67	32.52
CDX74300	Canola	cytosol	5.04	19.79
CDX91945	Canola	plastid	23.61	15.34
CDX74302	Canola	plastid	23.34	15.33

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	GO:A0A078CMG6	InterPro:AMPK1_CBM	EnsemblPlants:CDX78070
ProteinID:CDX78070	ProteinID:CDX78070.1	InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0005982	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203	EnsemblPlantsGene:GSBRNA2T00129361001
InterPro:IPR000387	InterPro:IPR013783	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00782
PFAM:PF16561	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF52799
SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0004EF1A07	SEG:seg	:	:

Description

BnaA09g32650D

Coordinates

chrLK031814:-:911419..914691

Molecular Weight (calculated)

42637.2 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.410

Length

377 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS LVSPLLGFGG NQRDPSSSSL KMLLPIRAND PKLRLVLQAV SDSKSSTDMS GGVSKEEEEK SDEYSQDMTQ KMGAVLTYRH ELGMNYNFLR
101: PDLICGSCLQ TPEDVDKLRK IGVKTIFCLQ QDPDLEYFGV DIRSIQAYAK TFTDIEHIRC EIRDFDAFDL RMRLPAVLST LYKAVKRNGG VTYVHCTAGM
201: GRAPAVALTY MFWVQGYKLM EAHKILMSKR TCFPKLDAIR NATIDILTGL KKKTVTLTLK DKGFSTVEIS GLDIGWGQRI PLTLDKGTGF WSLKRELPEG
301: QFEYKYIIDG EWTHNEQEPF TGPNKDGHTN NYAKVVYDPT SVDGATRERL TREDPELLED ERLKLVQFLE TCSEAEV

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.