Factsheet for TraesCS4B01G360800.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	TraesCS1A01G350500.1	AT3G29160.1	12148529
AT3G52180.1	TraesCS1B01G364800.1	AT3G29160.1	12148529
AT3G52180.1	TraesCS1D01G353300.1	AT3G29160.1	12148529
AT3G52180.1	TraesCS3A01G282800.1	AT3G29160.1	12148529
AT3G52180.1	TraesCS3B01G316500.1	AT3G29160.1	12148529
AT3G52180.1	TraesCS3D01G282800.1	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G353800.1	Wheat	plastid	98.64	98.64
TraesCS5A01G529100.1	Wheat	plastid	98.37	98.37
HORVU4Hr1G086650.11	Barley	plastid	94.58	89.26
KXG40392	Sorghum	plastid	84.01	83.11
Zm00001d027309_P007	Maize	plastid	84.01	79.28
KRG92090	Soybean	plastid	61.25	60.92
KRH34699	Soybean	nucleus	60.98	60.65
CDY72539	Canola	cytosol	39.3	58.47
VIT_00s0250g00020.t01	Wine grape	mitochondrion	59.08	57.67
Solyc11g007830.1.1	Tomato	plastid	57.45	57.3
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	56.64	56.18
PGSC0003DMT400039423	Potato	mitochondrion, plastid	56.64	56.18
PGSC0003DMT400070294	Potato	plastid	56.1	55.95
CDX73654	Canola	mitochondrion, plastid	56.91	55.7
CDX78070	Canola	mitochondrion, plastid	56.91	55.7
Bra006908.1-P	Field mustard	plastid	52.3	54.67
CDY23194	Canola	cytosol, plastid	55.83	54.64
AT3G52180.1	Thale cress	plastid	55.56	54.09
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	60.98	53.96
Bra033449.1-P	Field mustard	cytosol	54.2	36.23
TraesCS5B01G146700.1	Wheat	plastid	25.2	32.98
TraesCS1B01G466300.1	Wheat	plastid	23.04	14.29

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470
GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
GO:GO:0019203	GO:GO:0019538	GO:GO:0030246	GO:GO:0030247	GO:GO:2001066	InterPro:IPR000387
InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00782
PFAM:PF16561	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	EnsemblPlantsGene:TraesCS4B01G360800	EnsemblPlants:TraesCS4B01G360800.2
TIGR:cd02859	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:650683367..650688212

Molecular Weight (calculated)

41409.3 Da

IEP (calculated)

5.689

GRAVY (calculated)

-0.442

Length

369 amino acids

Sequence
(BLAST)

001: MNCLQHLLKE PPILAGSRSM RRPSPLNLAM VRGGSRRSNT VKTASGTSTS SAENSALEPG ADKSDTYSTN MTQAMGAVLT YRHELGMNYN FICPDLIVGS
101: CLQSPSDVDK LREIGVKTVF CLQQDPDLEY FGVDIGAIQD YCLECKDIEH CREEVRDFDA FDLRLRLPAV ISKLYKLASH NGGVTYIHCT AGLGRAPAVA
201: LAYMFWILGY NLNEGHQLLQ SKRPSFPKLE AIKLATADIL TGLSKNCITL KWKNGSCSSV EISGLDIGWG QKIPLAYDEE KKAWFLEREL PEGRYEYKYV
301: VDGNWVCNEH EMKTKPNADG HVNNYIQVAR DGTSDEEKAM RERLTGPDPD LTKEERLMIK EYLEQYTEQ

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.