Factsheet for TraesCS1B01G466300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G431500.2	Wheat	plastid	92.94	93.89
TraesCS1D01G440600.1	Wheat	plastid	95.8	91.2
HORVU1Hr1G093880.2	Barley	plastid	88.4	83.62
OQU80369	Sorghum	mitochondrion	76.64	83.21
Os08t0379300-01	Rice	plastid	79.83	80.1
Zm00001d032333_P004	Maize	plastid	76.3	76.17
GSMUA_Achr9P07030_001	Banana	plastid	62.86	68.88
VIT_14s0066g01200.t01	Wine grape	plastid	58.99	60.21
Solyc12g062260.1.1	Tomato	extracellular	17.98	56.61
PGSC0003DMT400077364	Potato	plastid	55.97	56.25
CDX91945	Canola	plastid	54.29	55.69
KRG94231	Soybean	plastid	54.79	55.35
CDX74302	Canola	plastid	53.28	55.23
KRH07193	Soybean	plastid	53.78	54.7
AT3G01510.1	Thale cress	plastid	54.29	54.65
Solyc12g062250.1.1	Tomato	plastid	50.76	52.71
TraesCS5B01G146700.1	Wheat	plastid	11.09	23.4
TraesCS4B01G360800.2	Wheat	plastid	14.29	23.04

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0019203	GO:GO:0019538	GO:GO:0043036	InterPro:IPR013783
InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	InterPro:LSF1	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	EnsemblPlantsGene:TraesCS1B01G466300	EnsemblPlants:TraesCS1B01G466300.1	TIGR:cd02859
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:676775473..676779684

Molecular Weight (calculated)

66350.4 Da

IEP (calculated)

9.216

GRAVY (calculated)

-0.330

Length

595 amino acids

Sequence
(BLAST)

001: MALSLMPPSS IALLAPRGRV RVGSAALPPP ASRFRAASSS RRRSGGRRRG LAVVAASEGG QEEEEEGPAA AAGRMNLNEY MVAVDRPLGL RFALAVDGRI
101: FVHSLKRGGN AEKSRIIMVG DTLKKAGTVH NEGLVSIKDL GDTEMVLKQE SGPCNLVLER PVAPYPIHQL HKNEDYHILF NRGRVSLPTW NSAILSSKLN
201: KSSPGNGKSG FAIFSPRLLS SQGWALLSSE KDGLNRRSTN LANWMSEIVG FYSDEDDMDA EWAHGSFPLE EYIKALDRAK GELYYNHSLG MQYSKITEQI
301: YVGSCIQTQK DVKMLSETVG ITAVLNFQSE SERINWGINS EAINNSCRQN NILMINYPIR EVDSMDLRKK LPFCVGLLLR LIRKNYRIYV TCTTGYDRSP
401: ACVIAYLHWV QDTPLHIAHK FITGLHSCRP DRAAIVWATW DLIALVETGR HDGTPTHSVC FVWNNGREGD DVELVGDFTS NWKDKLKCNH KGGSRYEAEV
501: RLRHGKYYYK FIVGGNWRHS SSLPSETDEH GNVNNVIRVG DIARIRPAPS QLQIKDPSVV KVIERTLTED ERFSLAFAAR LMAFAICPIR LAPKQ

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.