CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94231	Soybean	plastid	93.16	92.53
VIT_14s0066g01200.t01	Wine grape	plastid	65.64	65.87
AT3G01510.1	Thale cress	plastid	62.73	62.1
CDX74302	Canola	plastid	60.68	61.85
GSMUA_Achr9P07030_001	Banana	plastid	57.09	61.51
CDX91945	Canola	plastid	60.85	61.38
PGSC0003DMT400077364	Potato	plastid	62.05	61.32
OQU80369	Sorghum	mitochondrion	53.33	56.93
Solyc12g062250.1.1	Tomato	plastid	55.38	56.54
Os08t0379300-01	Rice	plastid	54.7	53.96
TraesCS1A01G431500.2	Wheat	plastid	54.19	53.82
TraesCS1B01G466300.1	Wheat	plastid	54.7	53.78
Zm00001d032333_P004	Maize	plastid	52.99	52.01
TraesCS1D01G440600.1	Wheat	plastid	54.53	51.04
HORVU1Hr1G093880.2	Barley	plastid	54.53	50.72
KRH64175	Soybean	cytosol	14.19	26.95
KRH53770	Soybean	plastid	13.5	26.87
KRH34699	Soybean	nucleus	14.36	22.64
KRG92090	Soybean	plastid	14.36	22.64

Protein Annotations

EntrezGene:100806392	MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	EMBL:ACUP02009947	InterPro:AMPK1_CBM
InterPro:Dual-sp_phosphatase_cat-dom	EnsemblPlantsGene:GLYMA_16G073500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019538
InterPro:IPR001478	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:K7MFQ1	EnsemblPlants:KRH07193	ProteinID:KRH07193	ProteinID:KRH07193.1	InterPro:LSF1	InterPro:PDZ
InterPro:PDZ_sf	PFAM:PF00782	PFAM:PF16561	PFscan:PS50054	PFscan:PS50106	PANTHER:PTHR10343
PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF50156	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom
UniParc:UPI000233AD92	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:7414249..7426535

Molecular Weight (calculated)

65480.2 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.349

Length

585 amino acids

Sequence
(BLAST)

001: MLPLQFGTHP PPSLFLSSSN SNACCSSSRL LYHHNRNNNK QHLLRSNVGT LSLRVFAVSG NSAFKMNLSE YLVTLEKPLG IRFALTSDGR IIVHSLTKGG
101: NAERSRIIMV GDTLKKAGDS SQNTLIEIKD VGDTQKVLKE QTSSFSLVLE RPTSPFPIQL LHKMNDLEIV FNRGRVPIAT WNKTLLASNL QSSSESCGNA
201: GFLMFNSKFL KPNGSKLLGN QNQHTITHGE RNIVTEHTTQ LACVFTEEVC GDGDWAHGSF PLEEYIQALD RSKDEMYYNH SLGMRYSKIT EQIYVGSCIQ
301: TEDDVETLSK VEGVTAVLNF QSGTEAENWG INAKSINESF QRKNILTINY PIREGDSYDM RKKLPFCVGL LLRLLRKNLR VFVTCTSGFD RAPACVIAYL
401: HWMTDVSLHA AYTWVTGMHT CRPDRPAIAW ATWDLIAMVE NGRHDGPPTH AVTFVWNGHE GEDVTLVGDF TGNWKEPLKA KHQGGSRHEV EVKLPQGKYY
501: YKFIVNGQWK HSTASPAERD DKGNVNNIIV IGETASVRPS VQHQQKDANI VKVIERPLNE KERFMLAKAA RCIAFSICPI RLGPK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.