CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07193	Soybean	plastid	92.53	93.16
VIT_14s0066g01200.t01	Wine grape	plastid	66.55	67.24
AT3G01510.1	Thale cress	plastid	62.99	62.77
CDX74302	Canola	plastid	60.61	62.2
PGSC0003DMT400077364	Potato	plastid	62.31	61.99
CDX91945	Canola	plastid	60.95	61.9
GSMUA_Achr9P07030_001	Banana	plastid	56.54	61.33
OQU80369	Sorghum	mitochondrion	53.65	57.66
Solyc12g062250.1.1	Tomato	plastid	55.69	57.24
TraesCS1A01G431500.2	Wheat	plastid	54.84	54.84
TraesCS1B01G466300.1	Wheat	plastid	55.35	54.79
Os08t0379300-01	Rice	plastid	54.84	54.47
Zm00001d032333_P004	Maize	plastid	53.48	52.85
TraesCS1D01G440600.1	Wheat	plastid	55.69	52.48
HORVU1Hr1G093880.2	Barley	plastid	54.67	51.19
KRH64175	Soybean	cytosol	14.09	26.95
KRH53770	Soybean	plastid	13.41	26.87
KRG92090	Soybean	plastid	14.09	22.37
KRH34699	Soybean	nucleus	13.92	22.1

Protein Annotations

EntrezGene:100814503	MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	EMBL:ACUP02011878	InterPro:AMPK1_CBM
InterPro:Dual-sp_phosphatase_cat-dom	EnsemblPlantsGene:GLYMA_19G069800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019538
InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K7MWV8
EnsemblPlants:KRG94231	ProteinID:KRG94231	ProteinID:KRG94231.1	InterPro:LSF1	InterPro:PDZ_sf	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF50156
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI000233E78F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:22733244..22743364

Molecular Weight (calculated)

66025.0 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.335

Length

589 amino acids

Sequence
(BLAST)

001: MLPLQFSTHP HHPPPSLFVS SSNNNACCSS SRLLYHHNRN NKVHHLLLRS NVGTLNLRVF AVSGSSAFKM NLNEYLVTLE KPLGIRFALT SDGKIIVHSL
101: TKGGNAERSR IIMVGDTLKK AGDSSQNTLV EIKDVGDTQK VLNEQTSSFS LVLERPTSPF PIQLLHKMND LEIVFNRGRV PIATWNKTLL ASNLQPSSES
201: CGNAGFLMFN SKFLKPNGSK LLSNQNQHII THGERNIVTE HTTQLACVFT EEVCGDGDWA HGSFPLEEYI QALDRSKDEM YYNHSLGMRY SKITEQIYVG
301: SCIQTEDDVE TLSKVEGVTA VLNFQSGTEA ENWGINAKSI NESCQRKNIL MINYPIREGD SYDMRKKLPF CVGLLLRLLR KNLRVFVTCT SGFDRSPACV
401: IAYLHWMTDV SLHAAYTWVT GMHTCRPDRP AIAWATWDLI AMAENGRHDG PPTHAVVFVW NGHEGEDVTL VGDFTGNWKE PLKAKHQGGS RHEVEVKLPQ
501: GKYYYKFIVN GQWKHSTASP AERDDRGNVN NIIVIGETAS VRPSVQHQQK DANVVKVIER PLNEKERFML AKAARCIAFS ICPIRLAPK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.