Factsheet for Os08t0379300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80369	Sorghum	mitochondrion	78.41	84.85
TraesCS1A01G431500.2	Wheat	plastid	79.43	79.97
TraesCS1B01G466300.1	Wheat	plastid	80.1	79.83
Zm00001d032333_P004	Maize	plastid	79.43	79.03
TraesCS1D01G440600.1	Wheat	plastid	80.27	76.16
HORVU1Hr1G093880.2	Barley	plastid	78.25	73.77
GSMUA_Achr9P07030_001	Banana	plastid	61.21	66.85
VIT_14s0066g01200.t01	Wine grape	plastid	57.17	58.15
Solyc12g062260.1.1	Tomato	extracellular	18.21	57.14
PGSC0003DMT400077364	Potato	plastid	55.99	56.08
CDX91945	Canola	plastid	54.64	55.86
CDX74302	Canola	plastid	53.46	55.23
KRG94231	Soybean	plastid	54.47	54.84
KRH07193	Soybean	plastid	53.96	54.7
AT3G01510.1	Thale cress	plastid	53.63	53.81
Solyc12g062250.1.1	Tomato	plastid	51.1	52.88
Os11t0113100-01	Rice	plasma membrane, plastid	12.14	26.57
Os12t0112500-01	Rice	plasma membrane, plastid	11.97	26.2
Os03t0107800-01	Rice	cytosol, nucleus	1.85	17.46

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	EntrezGene:4345438	InterPro:AMPK1_CBM	ProteinID:BAD05409.1
ProteinID:BAD05629.1	ProteinID:BAF23604.1	ProteinID:BAT05217.1	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005983
GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0019203	GO:GO:0019538	GO:GO:0043036	InterPro:IPR013783	InterPro:IPR020422
InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	InterPro:LSF1	EnsemblPlantsGene:Os08g0379300	EnsemblPlants:Os08t0379300-01
PFAM:PF00782	PFAM:PF16561	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like
UniProt:Q7EYM9	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI000022F222	RefSeq:XP_015650761.1
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 100Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os08t0379300-01);Hypothetical conserved gene. (Os08t0379300-02);Similar to 5'-AMP-activated protein kinase beta-1 subunit-related. (Os08t0379300-03)

Coordinates

chr8:+:17851904..17855906

Molecular Weight (calculated)

66048.8 Da

IEP (calculated)

7.881

GRAVY (calculated)

-0.289

Length

593 amino acids

Sequence
(BLAST)

001: MALHLTAAPT IAPSAAAACR SLAPMPPLPA VSCSSRWWRG RRRCVAVVAM AAAAAADGER PHGHAAEAGT GRMNLNEYMV AVDRPLGVRF ALAVDGRVFV
101: HSLKKGGNAE KSRIIMVGDT LKKAGSREGV GFVDIRDLGD TEMVLKETSG PCDLVLERPF APFPIHQLHQ NEDYHLLFNK GRVPLTSWNG ALLSSKLNES
201: SEGNGNPGFA IFSPRLLNSH GWAVLSSEQD GLNQRSTSLA NRISEIVGLY SDEDDADTEW AHGSFPLEEY IKALDRAKGE LYYNHSLGMQ YSKITEQIFV
301: GSCLQTERDV KMLSETMGIT AVLNFQSESE RTNWGINSEA INNSCRENNI LMVNYPIREV DSMDLRKKLS FCVGLLLRLI RKNYRIYVTC TTGYDRSPAC
401: VIAYLHWVQD TPLHIAHKFI TGLHSCRPDR AAIVWATWDL IALVENGRHD GTPTHSVCFV WNSGREGEDV ELVGDFTSNW KDKVKCDHKG GSRYEAEIRL
501: RHGKYYYKFI AGGQWRHSTS LPTETDEHGN VNNVIRVGDI ARIRPAPSQL QIRDPTVVKV IERALTEDER FLLAFAARRM AFAICPIRLS PKQ

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.