Factsheet for TraesCS1D01G440600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G466300.1	Wheat	plastid	91.2	95.8
TraesCS1A01G431500.2	Wheat	plastid	88.64	94.06
HORVU1Hr1G093880.2	Barley	plastid	85.28	84.74
OQU80369	Sorghum	mitochondrion	73.76	84.12
Os08t0379300-01	Rice	plastid	76.16	80.27
Zm00001d032333_P004	Maize	plastid	73.28	76.85
GSMUA_Achr9P07030_001	Banana	plastid	59.52	68.51
VIT_14s0066g01200.t01	Wine grape	plastid	56.16	60.21
Solyc12g062260.1.1	Tomato	extracellular	17.44	57.67
PGSC0003DMT400077364	Potato	plastid	53.92	56.93
CDX91945	Canola	plastid	51.84	55.86
KRG94231	Soybean	plastid	52.48	55.69
CDX74302	Canola	plastid	50.88	55.4
AT3G01510.1	Thale cress	plastid	52.16	55.16
KRH07193	Soybean	plastid	51.04	54.53
Solyc12g062250.1.1	Tomato	plastid	48.96	53.4
TraesCS5D01G144600.1	Wheat	plastid	10.56	23.4
TraesCS4D01G353800.1	Wheat	plastid	13.76	23.31

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0019203	GO:GO:0019538	GO:GO:0043036	InterPro:IPR013783
InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	InterPro:LSF1	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	EnsemblPlantsGene:TraesCS1D01G440600	EnsemblPlants:TraesCS1D01G440600.1	TIGR:cd02859
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:486066830..486070801

Molecular Weight (calculated)

70029.8 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.349

Length

625 amino acids

Sequence
(BLAST)

001: MALSLMPPSS IALLTPRGRV RVGPAAPPPP PASSVRAASS SRRRNGGRRR GLAVVAASEG GQEEEEEEGP TAAAGRMNLN EYMVAVDRPL GLRFALAVDG
101: RVFVHSLKRG GNAEKSRIIM VGDTLKKAGT DHNEGLVRIK DLGDTEYGTS KVSIAETFFV FFKYHRKIIV LDRRMVLNQE SGPCNLVLER PVAPYPIHQL
201: HQNEDYHILF NRGRVSLPTW NSAMLSSKLN KSSPGNGKSG FAVFSPRLLS SQGWALLSSE KDGLNRRSTN LANWMSEIVG FYSDEDDMDA EWAHGSFPLE
301: EYIKALDRAK GELYYNHSLG MQYSKITEQI YVGSCIQTQK DVKMLSETVG ITAVLNFQSE SERINWGINS EAINDSCRQN NILMINYPIR EVDSMDLRKK
401: LPFCVGLLLR LIRKNYRIYV TCTTGYDRSP ACVIAYLHWV QDTPLHIAHK FITGLHSCRP DRAAIVWATW DLIALVENGR HDGTPTHSVC FVWNNGREGE
501: DVELVGDFTS NWKDKLKCNH KGGSRYEAEV RLRHGKYYYK FIVGGNWRHS SLLPSETDEH GNVNNVIRVG DIARIRPAPS QLQIKDPSVV KVIERALTED
601: ERFSLAFAAR LMAFAICPIR LAPKQ

Best Arabidopsis Sequence Match ( AT3G01510.2 )
(BLAST)

001: MLVEKTGSFS LVLERPFSPF PIQYLLHLSD LDLLYNRGRV SFVTWNKNLL SSNLRASSQG SGNSGYAAFS SKFFTPQGWK LLNRQSNSFQ SGTKKNILSP
101: PISPLVSVFS EDVPGDGEWG YGNFPLEEYI KALDRSKGEL SYNHALGMRY SKITEQIYVG SCIQTEEDVE NLSEAGITAI LNFQGGTEAQ NWGIDSQSIN
201: DACQKSEVLM INYPIKDADS FDLRKKLPLC VGLLLRLLKK NHRVFVTCTT GFDRSSACVI AYLHWMTDTS LHAAYSFVTG LHACKPDRPA IAWATWDLIA
301: MVDDGKHDGT PTHSVTFVWN GHEGEEVLLV GDFTGNWKEP IKATHKGGPR FETEVRLTQG KYYYKYIING DWRHSATSPT ERDDRGNTNN IIVVGDVANV
401: RPTIQQPRKD ANIIKVIERV LTESERFRLA KAARCIAFSV CPIRLCPKS

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.