Factsheet for Solyc12g062250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077364	Potato	plastid	78.88	76.35
Solyc12g062260.1.1	Tomato	extracellular	24.78	75.13
VIT_14s0066g01200.t01	Wine grape	plastid	62.65	61.58
CDX74302	Canola	plastid	59.34	59.23
CDX91945	Canola	plastid	59.69	58.97
AT3G01510.1	Thale cress	plastid	59.34	57.53
KRG94231	Soybean	plastid	57.24	55.69
GSMUA_Achr9P07030_001	Banana	plastid	52.53	55.43
KRH07193	Soybean	plastid	56.54	55.38
OQU80369	Sorghum	mitochondrion	52.53	54.93
TraesCS1A01G431500.2	Wheat	plastid	52.71	51.27
Os08t0379300-01	Rice	plastid	52.88	51.1
TraesCS1B01G466300.1	Wheat	plastid	52.71	50.76
Zm00001d032333_P004	Maize	plastid	52.53	50.5
TraesCS1D01G440600.1	Wheat	plastid	53.4	48.96
HORVU1Hr1G093880.2	Barley	plastid	52.18	47.54
Solyc06g050230.2.1	Tomato	cytosol	6.98	20.73
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	13.44	20.7
Solyc11g007830.1.1	Tomato	plastid	13.26	20.54

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005983	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0019203
GO:GO:0043036	InterPro:IPR013783	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K4DG54
InterPro:LSF1	InterPro:PDZ_sf	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like
SUPFAM:SSF50156	SUPFAM:SSF52799	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc12g062250.1	EnsemblPlants:Solyc12g062250.1.1	UniParc:UPI000276A36A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:31521610..31526806

Molecular Weight (calculated)

64220.7 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.206

Length

573 amino acids

Sequence
(BLAST)

001: MSLELTHIFM HTNYTTSFYN QSHCSLKMCS LQLPNCRVFN DANFSSSSDK LQKCVVFSSF WGVELCFSDA RLTASSAVKR RQYRPISAMS SSSDSPFNMN
101: LNEYMVTLVK PLGIRFALSV DGKVFVHALK KGGNAEKSRI IMVGDTLKKA SDSSTGGLIE INDFGDTEKM MNENAGPCSL VLERPSFPFP IHQLYLMDDI
201: DILYNRGRVP IATWNKNLLA SNLRTSCEGS GNSGFVVFSP KLLTLNGWNV LSNGDPIRQQ GNLNGTPWLP FSPIINIFSE KDMIDSEWAH GNFPLEEYIK
301: ALDRSKGELY YNHDLGMRYN KITEQMYVGS CIQKESDVEI LSDVGITAVV NFQSGIEAEN WGINADIINE SCQRFNILMI NYPIRSPACV VAYLHWMTDT
401: SLHAAYNFVT GLHLCKPDRP AIAWATWDLI AMVEKGAHDG PATHAITFVW NGHEGEDVYL VGDFTDNWKE PIQAVHKGGP RFEAEVRLSQ GKYLYKYIIS
501: GNWRHSANSP TERDERGNLN NVIVVGDVAS VRPLIPQQKK VIERPLTENE RFMLAKAARC VAFSICPITL APK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.