CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74302	Canola	plastid	88.79	89.72
CDX74300	Canola	cytosol	14.31	86.46
AT3G01510.1	Thale cress	plastid	86.21	84.6
VIT_14s0066g01200.t01	Wine grape	plastid	68.97	68.61
PGSC0003DMT400077364	Potato	plastid	66.72	65.37
GSMUA_Achr9P07030_001	Banana	plastid	57.24	61.14
KRG94231	Soybean	plastid	61.9	60.95
KRH07193	Soybean	plastid	61.38	60.85
Solyc12g062250.1.1	Tomato	plastid	58.97	59.69
OQU80369	Sorghum	mitochondrion	54.14	57.3
Os08t0379300-01	Rice	plastid	55.86	54.64
TraesCS1B01G466300.1	Wheat	plastid	55.69	54.29
TraesCS1A01G431500.2	Wheat	plastid	55.0	54.16
Zm00001d032333_P004	Maize	plastid	53.62	52.18
TraesCS1D01G440600.1	Wheat	plastid	55.86	51.84
HORVU1Hr1G093880.2	Barley	plastid	55.34	51.03
CDY66368	Canola	plastid	12.76	25.87
CDY08562	Canola	plastid	12.76	25.87
CDY00979	Canola	plastid	12.76	25.87
CDY72539	Canola	cytosol	10.86	25.4
CDY23194	Canola	cytosol, plastid	15.86	24.4
CDX78070	Canola	mitochondrion, plastid	15.34	23.61
CDX73654	Canola	mitochondrion, plastid	15.17	23.34

Protein Annotations

KEGG:00051+3.1.3.-	KEGG:00332+3.1.3.-	KEGG:00565+3.1.3.-	KEGG:00600+3.1.3.-	KEGG:00730+3.1.3.-	KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-	MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	GO:A0A078DRL3	InterPro:AMPK1_CBM
EnsemblPlants:CDX91945	ProteinID:CDX91945	ProteinID:CDX91945.1	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00153581001	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021
InterPro:Ig-like_fold	InterPro:Ig_E-set	InterPro:LSF1	InterPro:PDZ_sf	PFAM:PF00782	PFAM:PF16561
PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF50156
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI0004EED93D	SEG:seg	:

Description

BnaC03g32470D

Coordinates

chrLK031870:+:932358..935150

Molecular Weight (calculated)

64245.7 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.272

Length

580 amino acids

Sequence
(BLAST)

001: MALLQQISGF GALERSSPSL LIGSGNGNGR VYGGRGKVGF SRRKLVLKVV AMSSSSTFKM NLNEYMVTLE KPLGIRFALS ADGKIFVHAI KKGSNAEKAR
101: IIMVGDTLKK ASDSSSGGSL VEINDFGDTE KMLVERSGSF SLVLERPFSP FPIQYLVHLS DLDLLYNRGR VSFVTWNQNL LSSNLRAASQ GSGNSGYAAF
201: SSKFFTPHGW KLLTKNSNSF QSGGTHKNIL SPPISPIVCV FSEQDSGDGE WGYGNFPLEE YIKALDRSKG ELRYNHALGM RYSKITEQIY VGSCIQTEDD
301: VENLSDAGIT AILNFQGGTE AQNWGIDSNK INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSPAC VIAYLHWMTD
401: TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD EPPTHAVTFV WNGHEGEDVL LVGDFTGNWK EPIKATHKGG PRFETEVRLS QGKYYYKYII
501: NGDWRHSTTS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.