Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74302 | Canola | plastid | 86.46 | 14.46 |
| CDX91945 | Canola | plastid | 86.46 | 14.31 |
| CDY72539 | Canola | cytosol | 19.79 | 7.66 |
| CDY23194 | Canola | cytosol, plastid | 20.83 | 5.31 |
| CDX78070 | Canola | mitochondrion, plastid | 19.79 | 5.04 |
| CDX73654 | Canola | mitochondrion, plastid | 18.75 | 4.77 |
| CDY00979 | Canola | plastid | 4.17 | 1.4 |
| CDY08562 | Canola | plastid | 4.17 | 1.4 |
| CDY66368 | Canola | plastid | 4.17 | 1.4 |
Protein Annotations
| KEGG:00051+3.1.3.- | KEGG:00332+3.1.3.- | KEGG:00565+3.1.3.- | KEGG:00600+3.1.3.- | KEGG:00730+3.1.3.- | KEGG:00740+3.1.3.- |
| KEGG:00760+3.1.3.- | Gene3D:2.60.40.10 | MapMan:35.1 | GO:A0A078CBW3 | InterPro:AMPK1_CBM | EnsemblPlants:CDX74300 |
| ProteinID:CDX74300 | ProteinID:CDX74300.1 | GO:GO:0005975 | GO:GO:0005983 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00112093001 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Ig_E-set |
| InterPro:LSF1 | PFAM:PF16561 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF57 | SUPFAM:SSF81296 | UniParc:UPI0004EEE43B |
Description
BnaA03g27470D
Coordinates
chrLK031800:-:2119606..2120400
Molecular Weight (calculated)
11299.8 Da
IEP (calculated)
10.213
GRAVY (calculated)
-0.542
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MLSHEKYYYK YIINGDWRHS TTSPTERDDR GNTNNIIVVG DVANVRPTIQ QPRKVRCKYH KIKVIERVLT ESEMFRLAKA ARCIAFSVCP IRIYPK
001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S
Arabidopsis Description
LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.