CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	CDX85250	AT3G29160.1	12148529
AT3G52180.1	CDX86386	AT3G29160.1	12148529
AT3G52180.1	CDY04058	AT3G29160.1	12148529
AT3G52180.1	CDY44405	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72539	Canola	cytosol	58.36	88.71
AT3G52180.1	Thale cress	plastid	82.49	82.06
CDX78070	Canola	mitochondrion, plastid	77.19	77.19
CDX73654	Canola	mitochondrion, plastid	76.92	76.92
KRH34699	Soybean	nucleus	62.07	63.07
PGSC0003DMT400039423	Potato	mitochondrion, plastid	62.07	62.9
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	62.07	62.9
KRG92090	Soybean	plastid	61.8	62.8
PGSC0003DMT400070294	Potato	plastid	61.27	62.43
VIT_00s0250g00020.t01	Wine grape	mitochondrion	62.33	62.17
Solyc11g007830.1.1	Tomato	plastid	59.68	60.81
Bra033449.1-P	Field mustard	cytosol	83.55	57.07
KXG40392	Sorghum	plastid	56.23	56.84
TraesCS4D01G353800.1	Wheat	plastid	54.91	56.1
TraesCS4B01G360800.2	Wheat	plastid	54.64	55.83
TraesCS5A01G529100.1	Wheat	plastid	53.85	55.01
Zm00001d027309_P007	Maize	plastid	55.44	53.45
HORVU4Hr1G086650.11	Barley	plastid	54.64	52.69
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	55.17	49.88
CDY66368	Canola	plastid	25.73	33.92
CDY08562	Canola	plastid	25.73	33.92
CDY00979	Canola	plastid	25.73	33.92
CDX74300	Canola	cytosol	5.31	20.83
CDX74302	Canola	plastid	24.67	16.2
CDX91945	Canola	plastid	24.4	15.86

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	GO:A0A078GCW9	UniProt:A0A078GCW9	InterPro:AMPK1_CBM
EnsemblPlants:CDY23194	ProteinID:CDY23194	ProteinID:CDY23194.1	ncoils:Coil	InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005982	GO:GO:0006464	GO:GO:0006470
GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0016791	GO:GO:0019203	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00021731001	InterPro:IPR000387
InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like
SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0004EF2E64
SEG:seg	:	:	:	:	:

Description

BnaA04g05650DBnaA04g05650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCW9]

Coordinates

chrLK032141:-:254894..258224

Molecular Weight (calculated)

42374.0 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.300

Length

377 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS SVSPLMGFVG NQRDPSSLKM MLLPIKACDP KLRLVLQAVS DSKSTSAEVS GVLKEEEEKS DEYSQDMTQA MGAVLTYRHE LGMNYSFIRP
101: DLIVGSCLQT PEDVDKLRKI GVKTIFCLQQ DPDLEYFGVD ISSIQAYAKT FTDIQHIRCQ IRDFDAFDLR LRLPAVVSTL YKAVKRNGGV TYVHCTAGMG
201: RAPAVALTYM FWVQGYKLME AHKLLMSKRT CSPNLDAIRN ATIDILTGLK KKIITLTLKD KGFSTVEVSG LDIGWGQRIP LTLDKGTGLW SLDRELPEGQ
301: FEYKYIIDGE WTHNELEPFT GPNKDGHTNN YVKVVDDPTS VDGATRERLS SEDPELLEEE RLKLIQFLET CSEQPQV

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.