CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029881.1-P	Field mustard	plastid	99.65	99.65
CDY66368	Canola	plastid	94.41	94.41
CDY00979	Canola	plastid	94.06	94.06
AT3G10940.1	Thale cress	plastid	81.47	82.62
PGSC0003DMT400074765	Potato	cytosol	61.89	82.33
Solyc06g050230.2.1	Tomato	cytosol	46.5	68.91
VIT_13s0067g02510.t01	Wine grape	plastid	65.73	66.43
Os12t0112500-01	Rice	plasma membrane, plastid	62.24	65.68
Os11t0113100-01	Rice	plasma membrane, plastid	61.89	65.31
KRH53770	Soybean	plastid	66.08	64.29
Zm00001d044693_P001	Maize	plastid	61.19	62.5
EES15654	Sorghum	plastid	61.19	62.5
TraesCS5D01G144600.1	Wheat	plastid	59.44	60.28
TraesCS5B01G146700.1	Wheat	plastid	58.74	59.57
HORVU5Hr1G046860.1	Barley	plastid	58.39	59.22
TraesCS5A01G148200.1	Wheat	plastid	58.39	59.22
KRH64175	Soybean	cytosol	63.64	59.09
GSMUA_Achr4P00220_001	Banana	plastid	27.62	44.38
CDY23194	Canola	cytosol, plastid	33.92	25.73
CDX78070	Canola	mitochondrion, plastid	32.52	24.67
CDX73654	Canola	mitochondrion, plastid	32.52	24.67
CDY72539	Canola	cytosol	20.63	23.79
CDX91945	Canola	plastid	25.87	12.76
CDX74302	Canola	plastid	25.52	12.72
Os03t0107800-01	Rice	cytosol, nucleus	1.05	4.76
CDX74300	Canola	cytosol	1.4	4.17

Protein Annotations

MapMan:18.4.23.2.3	MapMan:3.2.3.2.2	Gene3D:3.90.190.10	GO:A0A078F639	UniProt:A0A078F639	EnsemblPlants:CDY08562
ProteinID:CDY08562	ProteinID:CDY08562.1	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00000348001	InterPro:IPR000387
InterPro:IPR020422	InterPro:IPR029021	PFAM:PF00782	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159
PANTHER:PTHR10159:SF494	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom
UniParc:UPI0004EEF62C	:	:	:	:	:

Description

BnaA05g27980DBnaA05g27980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F639]

Coordinates

chrLK031986:+:740956..742576

Molecular Weight (calculated)

32491.6 Da

IEP (calculated)

8.729

GRAVY (calculated)

-0.688

Length

286 amino acids

Sequence
(BLAST)

001: MSFAGSKSCI FSLTNHYKEN DKSFRLNSIN KPSIDPKRFP RNLGVSCKIS GSNGAEENPG TNGVSLSSKN KMEDYNTAMK RLMRSPYEYH HDLGMNYTLI
101: RDELIVGSQP QKPEDIDHLK KEENVAYILN LQQDKDVEYW GIDLDSIVKR CKELGIRHMR RPAKDFDPLS LRSQLPKAVS SLEWAVSEGK GRVYVHCTAG
201: LGRAPAVSIA YMYWFCGMNL NTAYDAFVSK RPCGPNKGAI RGATYDLAKN DPWKEPFENL PENAFEDIAD WERKLIQERV RANRGT

Best Arabidopsis Sequence Match ( AT3G10940.1 )
(BLAST)

001: MSVIGSKSCI FSVARYTREN EKSSCFTSIN KKSSLDLRFP RNLAGVSCKF SGENPGTNGV SLSSKNKMED YNTAMKRLMR SPYEYHHDLG MNYTLIRDEL
101: IVGSQPQKPE DIDHLKQEQN VAYILNLQQD KDIEYWGIDL DSIVRRCKEL GIRHMRRPAK DFDPLSLRSQ LPKAVSSLEW AVSEGKGRVY VHCSAGLGRA
201: PGVSIAYMYW FCDMNLNTAY DTLVSKRPCG PNKGAIRGAT YDLAKNDPWK EPFESLPENA FEDIADWERK LIQERVRALR GT

Arabidopsis Description

LSF2Phosphoglucan phosphatase LSF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.