CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074765	Potato	cytosol	59.86	81.86
KRH64175	Soybean	cytosol	82.99	79.22
VIT_13s0067g02510.t01	Wine grape	plastid	68.37	71.02
GSMUA_Achr4P00230_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.76	68.94
Solyc06g050230.2.1	Tomato	cytosol	43.88	66.84
CDY08562	Canola	plastid	64.29	66.08
Bra029881.1-P	Field mustard	plastid	63.95	65.73
CDY66368	Canola	plastid	63.95	65.73
CDY00979	Canola	plastid	63.61	65.38
AT3G10940.1	Thale cress	plastid	61.9	64.54
Os12t0112500-01	Rice	plasma membrane, plastid	59.18	64.21
Os11t0113100-01	Rice	plasma membrane, plastid	58.84	63.84
Zm00001d044693_P001	Maize	plastid	58.16	61.07
EES15654	Sorghum	plastid	58.16	61.07
HORVU5Hr1G046860.1	Barley	plastid	57.82	60.28
TraesCS5B01G146700.1	Wheat	plastid	57.14	59.57
TraesCS5A01G148200.1	Wheat	plastid	56.46	58.87
TraesCS5D01G144600.1	Wheat	plastid	56.46	58.87
KRH34699	Soybean	nucleus	31.97	25.34
KRG92090	Soybean	plastid	31.97	25.34
KRH07193	Soybean	plastid	26.87	13.5
KRG94231	Soybean	plastid	26.87	13.41
Os03t0107800-01	Rice	cytosol, nucleus	1.36	6.35

Protein Annotations

EntrezGene:100787079	MapMan:18.4.23.2.3	MapMan:3.2.3.2.2	Gene3D:3.90.190.10	EMBL:ACUP02003480	InterPro:DUSP
InterPro:Dual-sp_phosphatase_cat-dom	EnsemblPlantsGene:GLYMA_06G145000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
GO:GO:0016791	GO:GO:0019538	UniProt:I1KBA3	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021
EnsemblPlants:KRH53770	ProteinID:KRH53770	ProteinID:KRH53770.1	ProteinID:KRH53771.1	PFAM:PF00782	PFscan:PS50054
PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF494	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799
InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI000233A153	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:11787399..11791748

Molecular Weight (calculated)

33733.1 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.718

Length

294 amino acids

Sequence
(BLAST)

001: MGTVSNIGFP SVFRVPLDSQ QALSKQMKNK SSCCFMVPPN HNYSIRPSPI RCNKLSESGI EENPTTTSTS KRPSKNKDRM EEYNIAMKRM MRNPYEYHHD
101: LGMNYTLITD NLIVGSQPQK PEDIDHLKKE EGVAYILNLQ QDKDVEYWGV DLQSIIRRCR ELEISHTRRP AKDFDPDSLR NGLPKAVSSL DWAFSEGKGR
201: VYVHCTAGLG RAPAAAIAYL FWFCDMNLNK AYDMLTSKRP CGPNKRAIRG ATYDLAKNDP WKEPFENLPE YAFEDIADWE RNLIQDRVRS LRGT

Best Arabidopsis Sequence Match ( AT3G10940.1 )
(BLAST)

001: MSVIGSKSCI FSVARYTREN EKSSCFTSIN KKSSLDLRFP RNLAGVSCKF SGENPGTNGV SLSSKNKMED YNTAMKRLMR SPYEYHHDLG MNYTLIRDEL
101: IVGSQPQKPE DIDHLKQEQN VAYILNLQQD KDIEYWGIDL DSIVRRCKEL GIRHMRRPAK DFDPLSLRSQ LPKAVSSLEW AVSEGKGRVY VHCSAGLGRA
201: PGVSIAYMYW FCDMNLNTAY DTLVSKRPCG PNKGAIRGAT YDLAKNDPWK EPFESLPENA FEDIADWERK LIQERVRALR GT

Arabidopsis Description

LSF2Phosphoglucan phosphatase LSF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.