Factsheet for Solyc06g050230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074765	Potato	cytosol	78.24	70.23
Os11t0113100-01	Rice	plasma membrane, plastid	67.36	47.97
Os12t0112500-01	Rice	plasma membrane, plastid	65.8	46.86
CDY00979	Canola	plastid	68.91	46.5
CDY08562	Canola	plastid	68.91	46.5
AT3G10940.1	Thale cress	plastid	67.88	46.45
VIT_13s0067g02510.t01	Wine grape	plastid	67.88	46.29
Bra029881.1-P	Field mustard	plastid	68.39	46.15
CDY66368	Canola	plastid	68.39	46.15
EES15654	Sorghum	plastid	65.8	45.36
Zm00001d044693_P001	Maize	plastid	65.8	45.36
HORVU5Hr1G046860.1	Barley	plastid	65.8	45.04
TraesCS5A01G148200.1	Wheat	plastid	65.8	45.04
TraesCS5B01G146700.1	Wheat	plastid	65.8	45.04
TraesCS5D01G144600.1	Wheat	plastid	65.8	45.04
KRH53770	Soybean	plastid	66.84	43.88
KRH64175	Soybean	cytosol	66.32	41.56
GSMUA_Achr4P00220_001	Banana	plastid	37.82	41.01
Solyc11g007830.1.1	Tomato	plastid	38.34	20.0
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	38.34	19.89
Solyc12g062250.1.1	Tomato	plastid	20.73	6.98
Solyc12g062260.1.1	Tomato	extracellular	5.7	5.82
Os03t0107800-01	Rice	cytosol, nucleus	1.04	3.17

Protein Annotations

MapMan:3.2.3.2.2	Gene3D:3.90.190.10	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
GO:GO:0016791	GO:GO:0019203	GO:GO:0019538	GO:GO:0030246	GO:GO:0046838	GO:GO:0050308
GO:GO:2001070	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	UniProt:K4C5G8	PFAM:PF00782
PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF494	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799
EnsemblPlantsGene:Solyc06g050230.2	EnsemblPlants:Solyc06g050230.2.1	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0002766934	:

Description

No Description!

Coordinates

chr6:-:32768659..32771155

Molecular Weight (calculated)

22449.5 Da

IEP (calculated)

5.938

GRAVY (calculated)

-0.201

Length

193 amino acids

Sequence
(BLAST)

001: MEEYNLAMKR MMRNPYEYHH ELGMNYTLIT EDLIVGSQPQ KIEDIDHLKE EENVSFILNL QQDKDIEFWG IDLQSIVTRC SELGINHMRR PARDFDPDSL
101: RSVLPKAVSS LEWAISEGKG RVYVHCTAGL GRAPAVSIAY MFWFCGMDPM IHLFQRDPVV PTKGQYEVLP MIWLKMISGR SPLRICQIMP LWM

Best Arabidopsis Sequence Match ( AT3G10940.1 )
(BLAST)

001: MSVIGSKSCI FSVARYTREN EKSSCFTSIN KKSSLDLRFP RNLAGVSCKF SGENPGTNGV SLSSKNKMED YNTAMKRLMR SPYEYHHDLG MNYTLIRDEL
101: IVGSQPQKPE DIDHLKQEQN VAYILNLQQD KDIEYWGIDL DSIVRRCKEL GIRHMRRPAK DFDPLSLRSQ LPKAVSSLEW AVSEGKGRVY VHCSAGLGRA
201: PGVSIAYMYW FCDMNLNTAY DTLVSKRPCG PNKGAIRGAT YDLAKNDPWK EPFESLPENA FEDIADWERK LIQERVRALR GT

Arabidopsis Description

LSF2Phosphoglucan phosphatase LSF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.