Factsheet for Zm00001d044693_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15654	Sorghum	plastid	84.29	84.29
PGSC0003DMT400074765	Potato	cytosol	60.0	78.14
TraesCS5D01G144600.1	Wheat	plastid	73.57	73.05
Os12t0112500-01	Rice	plasma membrane, plastid	70.0	72.32
Os11t0113100-01	Rice	plasma membrane, plastid	70.0	72.32
HORVU5Hr1G046860.1	Barley	plastid	68.93	68.44
TraesCS5B01G146700.1	Wheat	plastid	67.86	67.38
TraesCS5A01G148200.1	Wheat	plastid	67.14	66.67
Solyc06g050230.2.1	Tomato	cytosol	45.36	65.8
CDY08562	Canola	plastid	62.5	61.19
Bra029881.1-P	Field mustard	plastid	62.14	60.84
CDY00979	Canola	plastid	62.14	60.84
AT3G10940.1	Thale cress	plastid	61.07	60.64
CDY66368	Canola	plastid	61.79	60.49
VIT_13s0067g02510.t01	Wine grape	plastid	61.07	60.42
KRH53770	Soybean	plastid	61.07	58.16
KRH64175	Soybean	cytosol	60.36	54.87
GSMUA_Achr4P00220_001	Banana	plastid	31.43	49.44
Zm00001d027309_P007	Maize	plastid	33.57	24.04
Zm00001d032333_P004	Maize	plastid	26.07	12.25

Protein Annotations

MapMan:18.4.23.2.3	MapMan:3.2.3.2.2	Gene3D:3.90.190.10	EntrezGene:732726	EMBL:BT061496	UniProt:C0HGP0
InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464
GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203
GO:GO:0019538	GO:GO:0030246	GO:GO:0046838	GO:GO:0050308	GO:GO:2001070	InterPro:IPR000387
InterPro:IPR020422	InterPro:IPR029021	ProteinID:ONM42275.1	PFAM:PF00782	PFscan:PS50054	PFscan:PS50056
PANTHER:PTHR10159	PANTHER:PTHR10159:SF494	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	InterPro:TYR_PHOSPHATASE_DUAL_dom
InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0001948A1E	EnsemblPlantsGene:Zm00001d044693	EnsemblPlants:Zm00001d044693_P001	EnsemblPlants:Zm00001d044693_T001	:

Description

Phosphoglucan phosphatase LSF2 chloroplastic

Coordinates

chr3:+:235061755..235065086

Molecular Weight (calculated)

31422.6 Da

IEP (calculated)

9.188

GRAVY (calculated)

-0.466

Length

280 amino acids

Sequence
(BLAST)

001: MAAMANTSRL PTPCSLPTIS IGAKSRRLAV AAVRCGPGGS RSHRRSLGVL LCRSSSTAGA QGSTRMEDYN TAMKRMMRNP YEYHHDLGMN YAVISESLIV
101: GSQPQKPEDI DRLKNEERVA YILCLQQDKD IEYWGIDFQS IVNRCKELGI QHIRRPAVDF DPDSLRSQLP KAVSALEWAT SQRKGRVYVH CTAGLGRAPA
201: VAIAYMFWFE NMDLNTAYQK LTSIRPCGPS KRAIRAATYD LAKNDPSKEP FENLPEHAFE GVADWERKLI HDRVRALHEA

Best Arabidopsis Sequence Match ( AT3G10940.1 )
(BLAST)

001: MSVIGSKSCI FSVARYTREN EKSSCFTSIN KKSSLDLRFP RNLAGVSCKF SGENPGTNGV SLSSKNKMED YNTAMKRLMR SPYEYHHDLG MNYTLIRDEL
101: IVGSQPQKPE DIDHLKQEQN VAYILNLQQD KDIEYWGIDL DSIVRRCKEL GIRHMRRPAK DFDPLSLRSQ LPKAVSSLEW AVSEGKGRVY VHCSAGLGRA
201: PGVSIAYMYW FCDMNLNTAY DTLVSKRPCG PNKGAIRGAT YDLAKNDPWK EPFESLPENA FEDIADWERK LIQERVRALR GT

Arabidopsis Description

LSF2Phosphoglucan phosphatase LSF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.