Factsheet for VIT_13s0067g02510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074765	Potato	cytosol	62.54	82.33
GSMUA_Achr4P00230_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.93	70.19
KRH53770	Soybean	plastid	71.02	68.37
Solyc06g050230.2.1	Tomato	cytosol	46.29	67.88
AT3G10940.1	Thale cress	plastid	66.08	66.31
CDY08562	Canola	plastid	66.43	65.73
CDY66368	Canola	plastid	66.43	65.73
Bra029881.1-P	Field mustard	plastid	66.08	65.38
CDY00979	Canola	plastid	66.08	65.38
KRH64175	Soybean	cytosol	70.67	64.94
Os11t0113100-01	Rice	plasma membrane, plastid	60.78	63.47
Os12t0112500-01	Rice	plasma membrane, plastid	60.42	63.1
HORVU5Hr1G046860.1	Barley	plastid	61.13	61.35
Zm00001d044693_P001	Maize	plastid	60.42	61.07
TraesCS5B01G146700.1	Wheat	plastid	60.78	60.99
TraesCS5D01G144600.1	Wheat	plastid	60.42	60.64
EES15654	Sorghum	plastid	59.72	60.36
TraesCS5A01G148200.1	Wheat	plastid	60.07	60.28
VIT_00s0250g00020.t01	Wine grape	mitochondrion	35.69	26.72
VIT_14s0066g01200.t01	Wine grape	plastid	24.73	12.01
Os03t0107800-01	Rice	cytosol, nucleus	1.06	4.76

Protein Annotations

EntrezGene:100251903	wikigene:100251903	MapMan:18.4.23.2.3	MapMan:3.2.3.2.2	Gene3D:3.90.190.10	ProteinID:CCB49809
ProteinID:CCB49809.1	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	UniProt:F6HC51	EMBL:FN595514	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	InterPro:IPR000387
InterPro:IPR020422	InterPro:IPR029021	EntrezGene:LOC100251903	wikigene:LOC100251903	PFAM:PF00782	PFscan:PS50054
PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF494	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799
TIGR:TC54152	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI000210A6F1	ArrayExpress:VIT_13s0067g02510	EnsemblPlantsGene:VIT_13s0067g02510
EnsemblPlants:VIT_13s0067g02510.t01	RefSeq:XP_002274406	RefSeq:XP_002274406.2	:	:	:

Description

No Description!

Coordinates

chr13:+:1367864..1370816

Molecular Weight (calculated)

32124.3 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.565

Length

283 amino acids

Sequence
(BLAST)

001: MGAIGNSCFH LAFKNPIENG VVLMKNKSSC KLMVPSNSFK VKRISCKLSE SGVEESATSN RVSNSNNRME DYNTVMKGMM RNPYEYHHDL GMNYTLITDH
101: LIVGSQPQKP EDVDHLKQEE NVAYILNLQQ DKDVEYWEVD LPSIIKRCKE LEIRHMRRPA RDFDPDSLRS GLPKAVSSLE WAISEGKGKV YVHCTAGLGR
201: APAVAIAYMF WFCGMDLNTA YDTLTSKRPC GPSKQAIRGA TYDLAKNDPW KEPLESLPER AFEDVADWER NLIQDRVRSL RGT

Best Arabidopsis Sequence Match ( AT3G10940.1 )
(BLAST)

001: MSVIGSKSCI FSVARYTREN EKSSCFTSIN KKSSLDLRFP RNLAGVSCKF SGENPGTNGV SLSSKNKMED YNTAMKRLMR SPYEYHHDLG MNYTLIRDEL
101: IVGSQPQKPE DIDHLKQEQN VAYILNLQQD KDIEYWGIDL DSIVRRCKEL GIRHMRRPAK DFDPLSLRSQ LPKAVSSLEW AVSEGKGRVY VHCSAGLGRA
201: PGVSIAYMYW FCDMNLNTAY DTLVSKRPCG PNKGAIRGAT YDLAKNDPWK EPFESLPENA FEDIADWERK LIQERVRALR GT

Arabidopsis Description

LSF2Phosphoglucan phosphatase LSF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.