Factsheet for VIT_14s0066g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077364	Potato	plastid	70.5	69.43
CDX91945	Canola	plastid	68.61	68.97
AT3G01510.1	Thale cress	plastid	69.47	68.53
CDX74302	Canola	plastid	66.72	67.77
GSMUA_Achr9P07030_001	Banana	plastid	62.61	67.22
KRG94231	Soybean	plastid	67.24	66.55
KRH07193	Soybean	plastid	65.87	65.64
OQU80369	Sorghum	mitochondrion	59.01	62.77
Solyc12g062250.1.1	Tomato	plastid	61.58	62.65
TraesCS1B01G466300.1	Wheat	plastid	60.21	58.99
TraesCS1A01G431500.2	Wheat	plastid	59.52	58.91
Os08t0379300-01	Rice	plastid	58.15	57.17
Zm00001d032333_P004	Maize	plastid	58.32	57.05
TraesCS1D01G440600.1	Wheat	plastid	60.21	56.16
HORVU1Hr1G093880.2	Barley	plastid	60.38	55.96
VIT_13s0067g02510.t01	Wine grape	plastid	12.01	24.73
VIT_00s0250g00020.t01	Wine grape	mitochondrion	14.24	21.96

Protein Annotations

EntrezGene:100252584	wikigene:100252584	MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	EMBL:AM467689
InterPro:AMPK1_CBM	ProteinID:CAN61666	ProteinID:CAN61666.1	ProteinID:CBI34916	ProteinID:CBI34916.3	UniProt:D7TWP1
InterPro:Dual-sp_phosphatase_cat-dom	EMBL:FN596252	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0019538	GO:GO:0046983	InterPro:IPR001478	InterPro:IPR013783	InterPro:IPR020422
InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100252584	wikigene:LOC100252584	InterPro:LSF1
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF00782	PFAM:PF16561	PFscan:PS50054	PFscan:PS50106
PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF50156	SUPFAM:SSF52799
SUPFAM:SSF81296	TIGR:TC60570	InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI00015C9272	ArrayExpress:VIT_14s0066g01200	EnsemblPlantsGene:VIT_14s0066g01200
EnsemblPlants:VIT_14s0066g01200.t01	unigene:Vvi.15660	RefSeq:XP_002274298	RefSeq:XP_002274298.1	:	:

Description

No Description!

Coordinates

chr14:+:27693164..27699869

Molecular Weight (calculated)

65023.8 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.229

Length

583 amino acids

Sequence
(BLAST)

001: MALYPLQLSS SRALHQSSFL GPFSASSWGR DFLCFPNATA AVTSSKKAIA RVYAMSSDTS SSFKMNLNEY MVTLEKPLGI RFALSADGKV FVHALKKGGN
101: AEKSRIIMVG DTLKKASDSP DGGLVEIKDY GDTQKMLEQK TGSFSLVLER PFSPFPIQQL HLMSDLDILF NRGRVPVATW NKTILASNLQ TCSDGGGNSG
201: FVTFSPKFIT SQGWKFLMGQ NGDVNSKMQR NILSPPISQL VCIFSEEESG DVEWAHGSFP LDEYIKALDR SKGELYYNHS LGMRYSKITE QIYVGSCIQT
301: EADVETLSNA GITAILNFQS GIEAENWGIN SRSINESCQK FNILMINYPI REVDSYGMRK KLPFCVGLLL RLLKKNHRVF VTCTTGFDRS PACVVAYLHW
401: MTDTSLHAAY NFVTGLHSCR PDRPAIAWAT WDLIAMVEKG KHDGPATHAV TFVWNGHEGE EVFLVGDFTA NWKEPIKAVH KGGSRYEVEV RLTQGKYYYK
501: FITNGQWRHS TASPTERDER ANVNNVIVVG DIASVRPSIQ QQKKDSNVVK VIERQLTENE RFMLAKAARC IAFSVCPIRL APK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.