Factsheet for GSMUA_Achr9P07030_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80369	Sorghum	mitochondrion	65.38	64.78
TraesCS1A01G431500.2	Wheat	plastid	68.32	62.99
TraesCS1B01G466300.1	Wheat	plastid	68.88	62.86
VIT_14s0066g01200.t01	Wine grape	plastid	67.22	62.61
Os08t0379300-01	Rice	plastid	66.85	61.21
Solyc12g062260.1.1	Tomato	extracellular	21.18	60.85
Zm00001d032333_P004	Maize	plastid	66.11	60.23
TraesCS1D01G440600.1	Wheat	plastid	68.51	59.52
HORVU1Hr1G093880.2	Barley	plastid	68.51	59.14
CDX74302	Canola	plastid	61.33	58.01
CDX91945	Canola	plastid	61.14	57.24
PGSC0003DMT400077364	Potato	plastid	62.25	57.09
KRH07193	Soybean	plastid	61.51	57.09
KRG94231	Soybean	plastid	61.33	56.54
AT3G01510.1	Thale cress	plastid	60.96	56.01
Solyc12g062250.1.1	Tomato	plastid	55.43	52.53
GSMUA_Achr4P00230_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.84	29.81
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	15.65	20.38
GSMUA_Achr4P00220_001	Banana	plastid	6.63	20.22

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569
GO:GO:0009570	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019203	GO:GO:0019538
GO:GO:0043036	EnsemblPlantsGene:GSMUA_Achr9G07030_001	EnsemblPlants:GSMUA_Achr9P07030_001	EnsemblPlants:GSMUA_Achr9T07030_001	InterPro:IPR001478	InterPro:IPR013783
InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	InterPro:LSF1	UniProt:M0TY62
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF00782	PFAM:PF16561	PFscan:PS50054	PFscan:PS50106
PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF50156	SUPFAM:SSF52799	SUPFAM:SSF81296
InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI0002957686	SEG:seg	:	:	:

Description

5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G07030_001]

Coordinates

chr9:+:4424771..4433228

Molecular Weight (calculated)

60390.6 Da

IEP (calculated)

8.410

GRAVY (calculated)

-0.157

Length

543 amino acids

Sequence
(BLAST)

001: MALILQLPPS SCCGTFRERS DRLAALSSPW IRVGGSLGRV ATVSAAANKG TAPRDLVRIS AMADQTVYKM NLNEYMVTLE KPLGIRFALS VDGRIFVHSL
101: KKGGNAEKSR IVMVGDALKK ASNVSSGGFI DIKDLRDAET MLKDIAGLFS LVLERPFSPY PIQQLHLSGV YHTLFNRGRV AFATWNRNVL ATDLQPGSEG
201: SGESGEDVEW AYGSFPLEEY IKALDRAKGE LYYNHSLGMQ YSKITEQIYV GSCIQTEKDV QTLSDAVGIT AVLNFQSESE RANWGINSES INDACCQKNI
301: LMVNYPIREV DSLDLRKKLP FCVGLLLRLL RKNFRIFVTC TTGFDRSPAC VIAYLHWIQD TALHAAHNFV TGLHSCRPDR AAIVWATWDL IAMVENGKHD
401: GPPTHAVNFV WSNGCREGDE VFLVGDFTNN WKEPIKAVHK GGSKFEAELR LRHGKYNYKF IINGQWRHSP ALPAESDECG NVNNVIGVGD IARIRPSPSH
501: LQIKDPTVVK VIERPLTEDE RFMLAFAARR IAFSICPIRL APK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.