Factsheet for PGSC0003DMT400077364

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062250.1.1	Tomato	plastid	76.35	78.88
VIT_14s0066g01200.t01	Wine grape	plastid	69.43	70.5
CDX74302	Canola	plastid	65.37	67.42
CDX91945	Canola	plastid	65.37	66.72
AT3G01510.1	Thale cress	plastid	65.2	65.31
KRG94231	Soybean	plastid	61.99	62.31
GSMUA_Achr9P07030_001	Banana	plastid	57.09	62.25
KRH07193	Soybean	plastid	61.32	62.05
OQU80369	Sorghum	mitochondrion	55.91	60.4
TraesCS1A01G431500.2	Wheat	plastid	56.08	56.37
Os08t0379300-01	Rice	plastid	56.08	55.99
TraesCS1B01G466300.1	Wheat	plastid	56.25	55.97
Zm00001d032333_P004	Maize	plastid	56.08	55.7
TraesCS1D01G440600.1	Wheat	plastid	56.93	53.92
HORVU1Hr1G093880.2	Barley	plastid	56.93	53.58
PGSC0003DMT400074765	Potato	cytosol	10.98	30.23
PGSC0003DMT400070294	Potato	plastid	15.37	24.59
PGSC0003DMT400039423	Potato	mitochondrion, plastid	15.37	24.46

Protein Annotations

EntrezGene:102603794	MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019203
GO:GO:0019538	GO:GO:0043036	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold
InterPro:Ig_E-set	InterPro:LSF1	UniProt:M1CYB0	InterPro:PDZ_sf	PFAM:PF00782	PFAM:PF16561
EnsemblPlantsGene:PGSC0003DMG400030092	PGSC:PGSC0003DMG400030092	EnsemblPlants:PGSC0003DMT400077364	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57
InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF50156	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom
UniParc:UPI00029622D3	RefSeq:XP_006341322.1	SEG:seg	:	:	:

Description

Protein tyrosine [Source:PGSC_GENE;Acc:PGSC0003DMG400030092]

Coordinates

chr12:-:38537725..38544334

Molecular Weight (calculated)

66429.4 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.249

Length

592 amino acids

Sequence
(BLAST)

001: MCSLQLPNCR VFNDGNFSSS SSSDKLQKCV VFSSFWGVEL CFNDGRFTAS SAVKRRQYRP ISVMSSSSDS PFNMNLNEYM VTLVKPLGIR FALSVDGKVF
101: VHALKKGGNA EKSRIIMVGD TLKKASDSST GGLIEINDFG DTEKMMNENS GPCSLILERP SFPFPIHQLY LMDDIDIMYN RGRVPVATWN KKLLASNLRT
201: SCEGSGNSGF VVFSPKLLTL NGWNVLSDGD QIRQQENLNG TPWLPFSPII NIFSEKDTTD SEWAHGNFPL EEYVKALDRS KGELYYNHDL GMRYSKITEQ
301: IYVGSCIQKE SDVEMLSDVG ITAVVNFQSG IEAENWGINA NIINESCQRF NILMINYPIR EGDSFDMRKK LPFCVGLLLR LLKKNHRVYV TCTTGFDRSP
401: ACVVAYLHWM TDTSLHAAYN FVTGLHLCKP DRPAIAWATW DLIAMVENGA HDGPATHAVT FVWNGHEGED VYLVGDFTGN WKEPIQAVHK GGPRFEAEVR
501: LSQGKYLYKY IISGNWRHST NSPTERDERG NLNNVIVVGD VASVRPFIQQ QKKDANIMKV IERPLTENER FMLAKAARCV AFSICPITLA PK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.