Factsheet for PGSC0003DMT400039423

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	PGSC0003DMT400063153	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	96.51	96.51
PGSC0003DMT400070294	Potato	plastid	87.1	87.57
KRH34699	Soybean	nucleus	67.2	67.39
KRG92090	Soybean	plastid	67.2	67.39
VIT_00s0250g00020.t01	Wine grape	mitochondrion	66.94	65.87
Bra006908.1-P	Field mustard	plastid	59.68	62.89
CDY23194	Canola	cytosol, plastid	62.9	62.07
AT3G52180.1	Thale cress	plastid	62.9	61.74
CDY72539	Canola	cytosol	40.86	61.29
CDX78070	Canola	mitochondrion, plastid	57.8	57.03
CDX73654	Canola	mitochondrion, plastid	57.53	56.76
TraesCS4B01G360800.2	Wheat	plastid	56.18	56.64
TraesCS4D01G353800.1	Wheat	plastid	55.65	56.1
TraesCS5A01G529100.1	Wheat	plastid	55.38	55.83
KXG40392	Sorghum	plastid	55.38	55.23
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	60.48	53.96
Zm00001d027309_P007	Maize	plastid	55.91	53.2
HORVU4Hr1G086650.11	Barley	plastid	54.84	52.17
PGSC0003DMT400074765	Potato	cytosol	23.92	41.4
Bra033449.1-P	Field mustard	cytosol	59.14	39.86
PGSC0003DMT400077364	Potato	plastid	24.46	15.37

Protein Annotations

EntrezGene:102588806	Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	InterPro:DSP4
InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005982	GO:GO:0006464
GO:GO:0006470	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203	GO:GO:0019538	InterPro:IPR000387
InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1B8A0
PFAM:PF00782	PFAM:PF16561	EnsemblPlantsGene:PGSC0003DMG400015246	PGSC:PGSC0003DMG400015246	EnsemblPlants:PGSC0003DMT400039423	PFscan:PS50056
PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF81296
InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0002968614	RefSeq:XP_006351483.1	:	:

Description

Protein tyrosine phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400015246]

Coordinates

chr3:+:50775724..50785587

Molecular Weight (calculated)

41566.5 Da

IEP (calculated)

4.849

GRAVY (calculated)

-0.246

Length

372 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS SGLPLRSFTG NSRKPSPTVV SLGMTKFAEQ RLSIVAQVVS GPESSTAKDK DAGKSDTYSH DMTAAMGAVL TYRHELGMNY NFILPDLIVG
101: SCLQTPEDVD KLRSIGVKTI FCLQQNPDLE YFGVDIEAIC EYANKCGDIE HLRAEIRDFD AFDLRLRLPA VIRKLNNAIN RNGGVTYIHC TAGLGRAPAV
201: ALTYMFWVQC YKLTDAVSLL MSKRPCFPNL DAIKSATADI LTGLKKTPVT LTWRGDNCTT VELSGLDIGW WQRIPLKFDK EQGLWTLQRE LPEGHYEYKY
301: IVDGEWICNE FEPITSPNKD GYVNNYVEVL DETPDNITSA AIRKRFSGDD PDLTSYEGLI IGQFLEGYAD VE

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.