CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	CDX85250	AT3G29160.1	12148529
AT3G52180.1	CDX86386	AT3G29160.1	12148529
AT3G52180.1	CDY04058	AT3G29160.1	12148529
AT3G52180.1	CDY44405	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78070	Canola	mitochondrion, plastid	96.55	96.55
CDY72539	Canola	cytosol	62.33	94.76
Bra006908.1-P	Field mustard	plastid	78.25	83.57
AT3G52180.1	Thale cress	plastid	80.64	80.21
CDY23194	Canola	cytosol, plastid	76.92	76.92
KRH34699	Soybean	nucleus	61.54	62.53
KRG92090	Soybean	plastid	60.74	61.73
Solyc11g007830.1.1	Tomato	plastid	58.62	59.73
PGSC0003DMT400070294	Potato	plastid	57.82	58.92
VIT_00s0250g00020.t01	Wine grape	mitochondrion	58.89	58.73
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	57.56	58.33
KXG40392	Sorghum	plastid	57.29	57.91
PGSC0003DMT400039423	Potato	mitochondrion, plastid	56.76	57.53
TraesCS4D01G353800.1	Wheat	plastid	55.97	57.18
TraesCS4B01G360800.2	Wheat	plastid	55.7	56.91
TraesCS5A01G529100.1	Wheat	plastid	54.91	56.1
Zm00001d027309_P007	Maize	plastid	56.76	54.73
HORVU4Hr1G086650.11	Barley	plastid	54.64	52.69
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	54.64	49.4
CDY66368	Canola	plastid	24.93	32.87
CDY00979	Canola	plastid	24.93	32.87
CDY08562	Canola	plastid	24.67	32.52
CDX74300	Canola	cytosol	4.77	18.75
CDX74302	Canola	plastid	23.34	15.33
CDX91945	Canola	plastid	23.34	15.17

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	GO:A0A078CBS7	InterPro:AMPK1_CBM	EnsemblPlants:CDX73654
ProteinID:CDX73654	ProteinID:CDX73654.1	InterPro:DSP4	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0005982	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203	EnsemblPlantsGene:GSBRNA2T00109234001
InterPro:IPR000387	InterPro:IPR013783	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00782
PFAM:PF16561	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF52799
SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0004EE422E	SEG:seg	:	:

Description

BnaC08g23490D

Coordinates

chrLK031799:+:1972722..1975963

Molecular Weight (calculated)

42592.0 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.386

Length

377 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS LVSPLLGFGG NQRDPCSSSL KMLLPIRAND PKLRLVLQAV SDSKSSTDMN GGVSKEEEEK SDEYSQDMTQ AMGAVLTYRH EFGMNYNFLR
101: PDLIVGSCLQ TPEDVDKLRK IGVKTIFCLQ QDPDLEYFGV DIRSIQAYAK TFTDIEHIRC EIRDFDAFDL RMRLPAVLST LYKAVKRNGG VTYVHCTAGM
201: GRAPAAALAY MFWVQGYKLM EAHKILMSKR TCFPKLDAIR NATIDILTGL KKKTVTLTLR DKGFSTVEIS GLDIGWGQRI PLTLDKGTGF WSLKRELPEG
301: QFEYKYIIDG EWTYNEQEPF TGPNKDGHTN NYAKVVYDPT SVDGATRERL TSEDPELLEE ERLKLIQFLE TSSEAEV

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.