CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01406
EES19859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	EES01406	AT3G29160.1	12148529
AT3G52180.1	EES19859	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027309_P007	Maize	plastid	96.51	92.07
TraesCS4B01G360800.2	Wheat	plastid	83.11	84.01
TraesCS5A01G529100.1	Wheat	plastid	82.57	83.47
TraesCS4D01G353800.1	Wheat	plastid	82.57	83.47
HORVU4Hr1G086650.11	Barley	plastid	80.7	76.98
KRH34699	Soybean	nucleus	61.93	62.26
KRG92090	Soybean	plastid	61.39	61.73
CDY72539	Canola	cytosol	40.75	61.29
VIT_00s0250g00020.t01	Wine grape	mitochondrion	59.52	58.73
Solyc11g007830.1.1	Tomato	plastid	57.64	58.11
CDX73654	Canola	mitochondrion, plastid	57.91	57.29
CDX78070	Canola	mitochondrion, plastid	57.64	57.03
Bra006908.1-P	Field mustard	plastid	53.89	56.94
PGSC0003DMT400070294	Potato	plastid	56.3	56.76
CDY23194	Canola	cytosol, plastid	56.84	56.23
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	62.47	55.88
AT3G52180.1	Thale cress	plastid	56.57	55.67
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	55.5	55.65
PGSC0003DMT400039423	Potato	mitochondrion, plastid	55.23	55.38
Bra033449.1-P	Field mustard	cytosol	55.76	37.68
EES15654	Sorghum	plastid	25.2	33.57
OQU80369	Sorghum	mitochondrion	21.72	14.78

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	UniProt:A0A1B6QR46	InterPro:AMPK1_CBM	InterPro:DSP4
InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0005983	GO:GO:0006464
GO:GO:0006470	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
GO:GO:0016791	GO:GO:0019203	GO:GO:0019538	GO:GO:0030246	GO:GO:0030247	GO:GO:2001066
InterPro:IPR000387	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set
EnsemblPlants:KXG40392	ProteinID:KXG40392	ProteinID:KXG40392.1	ProteinID:KXG40393.1	PFAM:PF00782	PFAM:PF16561
PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	EnsemblPlantsGene:SORBI_3001G538800
SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI0003C6ADB5	:

Description

hypothetical protein

Coordinates

chr1:+:80136815..80142400

Molecular Weight (calculated)

41827.9 Da

IEP (calculated)

5.491

GRAVY (calculated)

-0.369

Length

373 amino acids

Sequence
(BLAST)

001: MNCLQNLLKE PPIVGSRSMR RPSPLNLAMV RGGSRRSNTV KTLQAPGAST SGAESSAVEM GTEKSEVYST NMTHAMGAAL TYRHELGMNY NFIRPDLIVG
101: SCLQSPLDVD KLRKIGVKTV FCLQQDSDLE YFGVDIGAIQ DYSLQFKDIM HCRAEIRDFD AFDLRLRLPA VVSKLHKLVN CNGGVTYIHC TAGLGRAPAV
201: ALAYMFWILG YSLNEGHQLL QSKRACFPKL EAIKLATADI LTGLSKNTIT LKWEDDGSSS VEISGLDIGW GQRIPLTYDE ERGAWFLEKE LPEGRYEYKY
301: IVDGKWLCNE HEMLTKPNAD GHVNNYVQVS RDGTSDEEKE LRERLTGPDP VLTDEERLMI REYLEQYADA GER

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.