CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032333_P004	Maize	plastid	90.33	83.05
Os08t0379300-01	Rice	plastid	84.85	78.41
TraesCS1A01G431500.2	Wheat	plastid	83.76	77.93
TraesCS1B01G466300.1	Wheat	plastid	83.21	76.64
TraesCS1D01G440600.1	Wheat	plastid	84.12	73.76
HORVU1Hr1G093880.2	Barley	plastid	82.85	72.18
GSMUA_Achr9P07030_001	Banana	plastid	64.78	65.38
VIT_14s0066g01200.t01	Wine grape	plastid	62.77	59.01
Solyc12g062260.1.1	Tomato	extracellular	20.07	58.2
PGSC0003DMT400077364	Potato	plastid	60.4	55.91
CDX91945	Canola	plastid	57.3	54.14
CDX74302	Canola	plastid	56.2	53.66
KRG94231	Soybean	plastid	57.66	53.65
KRH07193	Soybean	plastid	56.93	53.33
AT3G01510.1	Thale cress	plastid	56.93	52.79
Solyc12g062250.1.1	Tomato	plastid	54.93	52.53
EES15654	Sorghum	plastid	12.96	25.36
KXG40392	Sorghum	plastid	14.78	21.72

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	UniProt:A0A1Z5R9X3	InterPro:AMPK1_CBM	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005983	GO:GO:0006464	GO:GO:0006470
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019203
GO:GO:0019538	GO:GO:0043036	InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold
InterPro:Ig_E-set	InterPro:LSF1	EnsemblPlants:OQU80369	ProteinID:OQU80369	ProteinID:OQU80369.1	InterPro:PDZ_sf
PFAM:PF00782	PFAM:PF16561	PFscan:PS50054	PANTHER:PTHR10343	PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like
EnsemblPlantsGene:SORBI_3007G116600	SUPFAM:SSF50156	SUPFAM:SSF52799	SUPFAM:SSF81296	InterPro:TYR_PHOSPHATASE_DUAL_dom	UniParc:UPI000B8BA7B2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:50476741..50481066

Molecular Weight (calculated)

60901.7 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.300

Length

548 amino acids

Sequence
(BLAST)

001: MMMMRRKGLS VAAAAAAQGA EPGGPAGPMR LNEYMVAVDR PLGVRFALGV DGRVFVHSLR KGGNAEKSRI IMVGDTLKKA GGDGEGLVTI KDLGDTESAL
101: RDKSGPCSLV LERPFAPFPI HQLHQNEDYH ILFNKGRAAV ASWNSAVLST KLNGSSTGDG KSGFAVFSPR LLSSQGWALL SNEKGGLNQS STNLANRISE
201: IVGLYSDEDD ANAEWAHGSF PLEEYIKALD RAKGELYYNH SLGMQYSKIT EQIFVGSCIQ TEKDVKMLSE TMGITAVLNF QSESERINWG INSETINSSC
301: RENNILMVNY PIREVDSVDL RKKLPFCVGL LLRLIRKNYR IYVTCTTGYD RSPACVISYL HWVQDTPLHI AHKFITGLHS CRPDRAAIVW ATWDLIALVE
401: NGRHDGSPTH SVCFVWNSGR EGEDVELVGD FTSNWKDKIR CNHKGGSRYE AEVRLRHGKY YYKFIVGGQW RHSTSLPTET DEHGNVNNVI RVGDIAWIRP
501: APSQLHIKDP TVVKVIERAL TEDERFSLAF AARRMAFAIC PIRLSPKQ

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.