Factsheet for Solyc12g062260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	golgi, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062250.1.1	Tomato	plastid	75.13	24.78
GSMUA_Achr9P07030_001	Banana	plastid	60.85	21.18
OQU80369	Sorghum	mitochondrion	58.2	20.07
TraesCS1A01G431500.2	Wheat	plastid	57.67	18.51
Zm00001d032333_P004	Maize	plastid	57.67	18.29
Os08t0379300-01	Rice	plastid	57.14	18.21
TraesCS1B01G466300.1	Wheat	plastid	56.61	17.98
TraesCS1D01G440600.1	Wheat	plastid	57.67	17.44
HORVU1Hr1G093880.2	Barley	plastid	57.14	17.17
Solyc11g007830.1.1	Tomato	plastid	21.16	10.81
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	20.11	10.22
Solyc06g050230.2.1	Tomato	cytosol	5.82	5.7

Protein Annotations

MapMan:18.4.23.2.3	Gene3D:2.60.40.10	Gene3D:3.90.190.10	InterPro:AMPK1_CBM	GO:GO:0005975	GO:GO:0005983
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:IPR013783	InterPro:IPR029021
InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K4DG55	InterPro:LSF1	PFAM:PF16561	PANTHER:PTHR10343
PANTHER:PTHR10343:SF57	InterPro:Prot-tyrosine_phosphatase-like	SUPFAM:SSF81296	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g062260.1	EnsemblPlants:Solyc12g062260.1.1
UniParc:UPI000276A36B	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:31529326..31530706

Molecular Weight (calculated)

21100.7 Da

IEP (calculated)

9.962

GRAVY (calculated)

-0.058

Length

189 amino acids

Sequence
(BLAST)

001: MIPTLSLVSL AFLTMNILNL LNPKHIGRRS AIAWATWALI AMVENGAHDG PATHAVTFVW NGHKGEDVYL VGDFTGNWKE PIQAVHKVGP RFEAEVRLSP
101: GKYLYKYIIS GNWRHSTNFP TERDERGSLN NLIVVGDVAS VRPLIPQQTK DANIMKVIER PLTENERFML AKAARCVAFS ICPIKLAPK

Best Arabidopsis Sequence Match ( AT3G01510.1 )
(BLAST)

001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S

Arabidopsis Description

LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.