Factsheet for Solyc11g007830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52180.1	Solyc02g067030.2.1	AT3G29160.1	12148529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070294	Potato	plastid	85.41	85.41
Solyc03g111160.2.1	Tomato	mitochondrion, plastid	77.84	77.42
KRG92090	Soybean	plastid	69.19	69.0
KRH34699	Soybean	nucleus	69.19	69.0
VIT_00s0250g00020.t01	Wine grape	mitochondrion	65.95	64.55
CDY72539	Canola	cytosol	42.7	63.71
Bra006908.1-P	Field mustard	plastid	58.38	61.19
CDY23194	Canola	cytosol, plastid	60.81	59.68
AT3G52180.1	Thale cress	plastid	61.08	59.63
CDX78070	Canola	mitochondrion, plastid	60.54	59.42
CDX73654	Canola	mitochondrion, plastid	59.73	58.62
KXG40392	Sorghum	plastid	58.11	57.64
TraesCS4B01G360800.2	Wheat	plastid	57.3	57.45
TraesCS4D01G353800.1	Wheat	plastid	56.76	56.91
TraesCS5A01G529100.1	Wheat	plastid	56.49	56.64
Zm00001d027309_P007	Maize	plastid	58.38	55.24
GSMUA_Achr8P14150_001	Banana	cytosol, golgi, mitochondrion, plastid	61.08	54.2
HORVU4Hr1G086650.11	Barley	plastid	55.95	52.94
Bra033449.1-P	Field mustard	cytosol	59.46	39.86
Solyc06g050230.2.1	Tomato	cytosol	20.0	38.34
Solyc12g062260.1.1	Tomato	extracellular	10.81	21.16
Solyc12g062250.1.1	Tomato	plastid	20.54	13.26

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.2.1	Gene3D:3.90.190.10	EMBL:AJ313509	InterPro:AMPK1_CBM	InterPro:DSP4
InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005982	GO:GO:0006464
GO:GO:0006470	GO:GO:0007623	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019203	GO:GO:0019538	InterPro:IPR000387
InterPro:IPR013783	InterPro:IPR020422	InterPro:IPR029021	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00782
PFAM:PF16561	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10343	PANTHER:PTHR10343:SF58	InterPro:Prot-tyrosine_phosphatase-like
UniProt:Q93X44	SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc11g007830.1	EnsemblPlants:Solyc11g007830.1.1
InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	UniParc:UPI00000AB8BB	:	:	:

Description

Protein tyrosine phosphatase [Source:UniProtKB/TrEMBL;Acc:Q93X44]

Coordinates

chr11:+:2048363..2053398

Molecular Weight (calculated)

41586.5 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.293

Length

370 amino acids

Sequence
(BLAST)

001: MNCLQNLPRS SGLPLRSFTG NSRKLYSTVV SLGMTKFADQ RLSIVAQVVS GPESTTEKDE EKSDTYSHDM TAAMGAVLTY RHELGMNYNF IRPDLIVGSC
101: LQTPEDVDKL RSIGVKTIFC LQQNPDLEYF GVDINAIREY ANKCGAIEHL RAEIRDFDAF DLRLRLPAVI SILNKAINRN GGVTYIHCTA GLGRAPAVAL
201: TYMFWVQGYK LSEAFDLLMS KRSCFPKLDA IKSATADILT GLKKMPVTLT WHGDNCTTVE ISGLDIGWGQ RIPLKFDEER GLWTLQKDLH EGKYEYKYIV
301: DGEWICNEFE PITSPNKDGH VNNYVEVLDE NPDNITSAAV RKRLTGDDPD LTSDERLIIE RFLEAHADVE

Best Arabidopsis Sequence Match ( AT3G52180.1 )
(BLAST)

001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV

Arabidopsis Description

DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.